miRNA display CGI


Results 61 - 80 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 7738 0.68 0.405053
Target:  5'- cGGGCGaggccgGGggcGCCCGccuCCCCcCCCGUg -3'
miRNA:   3'- -CCCGCa-----CCa--CGGGCu--GGGGcGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 7852 0.66 0.51465
Target:  5'- gGGGCGggGGUcGgUCGuagcggcGCCCCGCgCGUCg -3'
miRNA:   3'- -CCCGCa-CCA-CgGGC-------UGGGGCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 8026 0.69 0.330901
Target:  5'- gGGGCGcGG-G-CCGGCCuCCGCCgGCa -3'
miRNA:   3'- -CCCGCaCCaCgGGCUGG-GGCGGgCGg -5'
21519 5' -66.1 NC_004812.1 + 8057 0.75 0.131005
Target:  5'- cGGCGcccGGccgGCCCgcGACCCCGCCgCGCCc -3'
miRNA:   3'- cCCGCa--CCa--CGGG--CUGGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 8168 0.69 0.352059
Target:  5'- cGGGCGaGGgacucaCCgCGACCCCacGCuCCGCCc -3'
miRNA:   3'- -CCCGCaCCac----GG-GCUGGGG--CG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 8350 0.67 0.471402
Target:  5'- cGGGCGcGGccGCCCcACCgCGUcggcggCCGCCg -3'
miRNA:   3'- -CCCGCaCCa-CGGGcUGGgGCG------GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 8399 0.75 0.140708
Target:  5'- gGGGCGcggcgGGgGCUCGGCCCCGgCCGUa -3'
miRNA:   3'- -CCCGCa----CCaCGGGCUGGGGCgGGCGg -5'
21519 5' -66.1 NC_004812.1 + 8431 0.66 0.524585
Target:  5'- -----cGGagGCcgCCGcCCCCGCCCGCCg -3'
miRNA:   3'- cccgcaCCa-CG--GGCuGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 9920 0.68 0.400317
Target:  5'- aGGCGUGGcGCCCGGucuuggaaccggagcUCUCGaaCCCGCUc -3'
miRNA:   3'- cCCGCACCaCGGGCU---------------GGGGC--GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 10788 0.84 0.032849
Target:  5'- cGGGCGUGG-GCcgCCGACCCCGCC-GCCc -3'
miRNA:   3'- -CCCGCACCaCG--GGCUGGGGCGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 11043 0.72 0.208566
Target:  5'- cGGGCGccgccggUGGcGCCCGACCCCGggaCCaGCg -3'
miRNA:   3'- -CCCGC-------ACCaCGGGCUGGGGCg--GG-CGg -5'
21519 5' -66.1 NC_004812.1 + 11446 0.67 0.454283
Target:  5'- aGGCGUGcacGUGCCCguugacguacacGACgCacacguacaGCCCGCCg -3'
miRNA:   3'- cCCGCAC---CACGGG------------CUGgGg--------CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 11937 0.7 0.291439
Target:  5'- gGGGCGggGGUGgCgGGuucCUCCGuCCCGCCc -3'
miRNA:   3'- -CCCGCa-CCACgGgCU---GGGGC-GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 12363 0.67 0.462801
Target:  5'- uGGCGggGGgcgcGCCCGGCCgCG-CgGCCg -3'
miRNA:   3'- cCCGCa-CCa---CGGGCUGGgGCgGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 13036 0.71 0.267236
Target:  5'- gGGGuCGcGG-GgCCGGCCCCGgUCGCCc -3'
miRNA:   3'- -CCC-GCaCCaCgGGCUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 13097 0.67 0.429252
Target:  5'- -uGCGcucGUacGCCCGGgCCCGCCuCGCCg -3'
miRNA:   3'- ccCGCac-CA--CGGGCUgGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 13298 0.71 0.267236
Target:  5'- cGGCGgGGcGUCCGcguCUCCGCCgCGCCg -3'
miRNA:   3'- cCCGCaCCaCGGGCu--GGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 14041 0.68 0.404261
Target:  5'- cGGcCGUcagcaGGUGCCgGcccagaaGCCCCGCCuCGUCg -3'
miRNA:   3'- cCC-GCA-----CCACGGgC-------UGGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 14190 0.7 0.285231
Target:  5'- aGGGCGcGGaacucguuccgGCCguccuCGGCCCCGCCC-CCg -3'
miRNA:   3'- -CCCGCaCCa----------CGG-----GCUGGGGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 14301 0.67 0.471402
Target:  5'- aGGGCGc---GCCCcGCCgCGCCgGCCc -3'
miRNA:   3'- -CCCGCaccaCGGGcUGGgGCGGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.