miRNA display CGI


Results 81 - 100 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 14328 0.67 0.454283
Target:  5'- aGGGUGUaGGggugcUGCCCcACCUgCGCCUGCa -3'
miRNA:   3'- -CCCGCA-CC-----ACGGGcUGGG-GCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 15063 0.66 0.488843
Target:  5'- aGGCGgacUGGcgGCgacaCGuCgCCGCCCGCCg -3'
miRNA:   3'- cCCGC---ACCa-CGg---GCuGgGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 15396 0.69 0.344901
Target:  5'- cGGCac-GUaCUCGcCCCCGCCCGCCg -3'
miRNA:   3'- cCCGcacCAcGGGCuGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 15518 0.73 0.195186
Target:  5'- gGGGaGUGGcgcgUGCgUGACCCCGCCgGCg -3'
miRNA:   3'- -CCCgCACC----ACGgGCUGGGGCGGgCGg -5'
21519 5' -66.1 NC_004812.1 + 15903 0.71 0.273726
Target:  5'- aGGCGggggGGcaccucaucgacucgGCCgcgguCGACCCCGCCCuGCCg -3'
miRNA:   3'- cCCGCa---CCa--------------CGG-----GCUGGGGCGGG-CGG- -5'
21519 5' -66.1 NC_004812.1 + 15978 0.67 0.454283
Target:  5'- -cGCGgccGGcgGCgCCGACCCCGCggccCCGCg -3'
miRNA:   3'- ccCGCa--CCa-CG-GGCUGGGGCG----GGCGg -5'
21519 5' -66.1 NC_004812.1 + 16470 0.7 0.291439
Target:  5'- uGGGCGggucGUGUuuCCGcCCCCGUguCCGCCa -3'
miRNA:   3'- -CCCGCac--CACG--GGCuGGGGCG--GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 16702 0.69 0.347752
Target:  5'- cGGCG-GGUGCgCGAgCgaccgcggggccgguCCCGCUCGCCc -3'
miRNA:   3'- cCCGCaCCACGgGCU-G---------------GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 17043 0.72 0.213844
Target:  5'- cGGCGgggGGcGCCuCGGUCCCGgCCGCCg -3'
miRNA:   3'- cCCGCa--CCaCGG-GCUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 17297 0.69 0.324059
Target:  5'- cGGCGUGGcucGCC--GCCCuCGgCCGCCg -3'
miRNA:   3'- cCCGCACCa--CGGgcUGGG-GCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 17606 0.73 0.199713
Target:  5'- cGGGCGaGGcggGCCCGGgCgaaCCGCuCCGCCg -3'
miRNA:   3'- -CCCGCaCCa--CGGGCUgG---GGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 17648 0.69 0.333667
Target:  5'- gGGGCuucGGUcGCCggcggcucgcccucuCGGUCCCGCCCGCCc -3'
miRNA:   3'- -CCCGca-CCA-CGG---------------GCUGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 17876 0.68 0.374158
Target:  5'- gGGGCGaccGGccggcacGCCgCGGgCCCGCCgCGCCc -3'
miRNA:   3'- -CCCGCa--CCa------CGG-GCUgGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 18181 0.69 0.337848
Target:  5'- aGGGCGaUGGgGCgCCGGCagCCC-CCCGCg -3'
miRNA:   3'- -CCCGC-ACCaCG-GGCUG--GGGcGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 18232 0.69 0.330901
Target:  5'- cGGGCG-GcGUaCgCGcCCCCGCCCGUCc -3'
miRNA:   3'- -CCCGCaC-CAcGgGCuGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 18343 0.75 0.144086
Target:  5'- aGGGCGcGGcGCgCGACCgCGgCCGCCg -3'
miRNA:   3'- -CCCGCaCCaCGgGCUGGgGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 18461 0.73 0.186402
Target:  5'- cGGCGgggGG-GCgCGGCCCCgcGCCCGCg -3'
miRNA:   3'- cCCGCa--CCaCGgGCUGGGG--CGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 18502 0.72 0.239299
Target:  5'- gGGGCGUcGaGCCggaGACCCCauCCCGCCa -3'
miRNA:   3'- -CCCGCAcCaCGGg--CUGGGGc-GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 18560 0.73 0.19075
Target:  5'- cGGCGcGG-GCCCG-CUCCGCcgCCGCCg -3'
miRNA:   3'- cCCGCaCCaCGGGCuGGGGCG--GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 18565 0.8 0.067851
Target:  5'- cGGGagcCGUGGUGCCCG-CCCgCGUUCGCCc -3'
miRNA:   3'- -CCC---GCACCACGGGCuGGG-GCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.