miRNA display CGI


Results 101 - 120 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 18794 0.69 0.337848
Target:  5'- gGGGCcagGGgGCCUGcuccgcggcGCCcucgCCGCCCGCCa -3'
miRNA:   3'- -CCCGca-CCaCGGGC---------UGG----GGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 18817 0.66 0.497675
Target:  5'- gGGGCG-GGUGUgCGGCgggcggcgguUgCGCgCCGCCc -3'
miRNA:   3'- -CCCGCaCCACGgGCUG----------GgGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 19081 0.7 0.279129
Target:  5'- gGGGCGUucGUGUCC-ACCgUGCCCGCg -3'
miRNA:   3'- -CCCGCAc-CACGGGcUGGgGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 19902 0.69 0.344901
Target:  5'- gGGGaCGcGGcgGCCCGcGCCgCCGCCaccgCGCCg -3'
miRNA:   3'- -CCC-GCaCCa-CGGGC-UGG-GGCGG----GCGG- -5'
21519 5' -66.1 NC_004812.1 + 20603 0.69 0.362256
Target:  5'- cGGGCGgGGcGCCCGcucagggcguccgucACgCgCCGCaCCGCCu -3'
miRNA:   3'- -CCCGCaCCaCGGGC---------------UG-G-GGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 20852 0.67 0.471402
Target:  5'- uGGGCGgagGGggGCUCGugGCCCCuCCCggacgGCCu -3'
miRNA:   3'- -CCCGCa--CCa-CGGGC--UGGGGcGGG-----CGG- -5'
21519 5' -66.1 NC_004812.1 + 20867 0.68 0.413024
Target:  5'- aGGGCGaccacCUCGAUgUCGCCCGCCg -3'
miRNA:   3'- -CCCGCaccacGGGCUGgGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 21035 0.69 0.358591
Target:  5'- uGGgGUGGcUGCgCGagaccguGCCCCGCCUgugGCCg -3'
miRNA:   3'- cCCgCACC-ACGgGC-------UGGGGCGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 21475 0.7 0.310693
Target:  5'- uGGGCG-GGccaCCGACCgCGCgCGCCc -3'
miRNA:   3'- -CCCGCaCCacgGGCUGGgGCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 21521 0.69 0.324059
Target:  5'- uGGGCGUGaagacggGCuCCGAgcgcgcCCCCGCcCCGUCc -3'
miRNA:   3'- -CCCGCACca-----CG-GGCU------GGGGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 22329 0.67 0.45768
Target:  5'- gGGGCuggaccUGGUuccCCuagacucggggaagaCGACCCCaGCCCGCCg -3'
miRNA:   3'- -CCCGc-----ACCAc--GG---------------GCUGGGG-CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 22595 0.71 0.25017
Target:  5'- cGGGCucGGaGCCCGACUCgGCCuCGUCg -3'
miRNA:   3'- -CCCGcaCCaCGGGCUGGGgCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 22675 0.7 0.290813
Target:  5'- cGGCG-GGaGCCCcgagcgGACCCCGCgucccccCCGCCc -3'
miRNA:   3'- cCCGCaCCaCGGG------CUGGGGCG-------GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 22915 0.68 0.405053
Target:  5'- gGGGCGUG--GCCgCGcCCCCGCgccuggaCGCCc -3'
miRNA:   3'- -CCCGCACcaCGG-GCuGGGGCGg------GCGG- -5'
21519 5' -66.1 NC_004812.1 + 23353 0.7 0.279129
Target:  5'- cGGCGcccuccuGUGCaCCG-CCCCGgCCGCCg -3'
miRNA:   3'- cCCGCac-----CACG-GGCuGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 23431 0.66 0.524585
Target:  5'- uGGCGUccugGuGUGCCuggCGGCCgCGUuuGCCg -3'
miRNA:   3'- cCCGCA----C-CACGG---GCUGGgGCGggCGG- -5'
21519 5' -66.1 NC_004812.1 + 23543 0.73 0.195186
Target:  5'- gGGGCG-GGaccGCCC--CCCgCGCCCGCCc -3'
miRNA:   3'- -CCCGCaCCa--CGGGcuGGG-GCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 23640 0.67 0.421091
Target:  5'- cGGGCGUcc-GCgUGACCCuCGCCCucgugGCCu -3'
miRNA:   3'- -CCCGCAccaCGgGCUGGG-GCGGG-----CGG- -5'
21519 5' -66.1 NC_004812.1 + 23823 0.81 0.055624
Target:  5'- gGGGCGgcgacccgGGgccgGCCCGGCCCgGCgCCGCCc -3'
miRNA:   3'- -CCCGCa-------CCa---CGGGCUGGGgCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 25187 0.75 0.151065
Target:  5'- gGGGCG-GcGUcGCggCGGCUCCGCCCGCCg -3'
miRNA:   3'- -CCCGCaC-CA-CGg-GCUGGGGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.