Results 121 - 140 of 686 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 25591 | 0.68 | 0.374158 |
Target: 5'- cGGCG-GGgacGCCUu-CCCCGCggCCGCCg -3' miRNA: 3'- cCCGCaCCa--CGGGcuGGGGCG--GGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 25710 | 0.7 | 0.285231 |
Target: 5'- cGGCGacGccCCCGGCCCCGCgCCGCg -3' miRNA: 3'- cCCGCacCacGGGCUGGGGCG-GGCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 25740 | 0.7 | 0.285231 |
Target: 5'- cGGUGUGG-GUcaUCGACgCCGCCgCGCCc -3' miRNA: 3'- cCCGCACCaCG--GGCUGgGGCGG-GCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 25865 | 0.66 | 0.480083 |
Target: 5'- gGGGCcUGGgguugGCggcggCCGGCCCucccgcggCGCCCGCg -3' miRNA: 3'- -CCCGcACCa----CG-----GGCUGGG--------GCGGGCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 26054 | 0.66 | 0.497675 |
Target: 5'- gGGGCGcGGcGCCCucgcgcGCCCCcgGCCCGg- -3' miRNA: 3'- -CCCGCaCCaCGGGc-----UGGGG--CGGGCgg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 26340 | 0.67 | 0.421091 |
Target: 5'- cGGCGagccGUgGCCCGGCgCCGagCCGCCg -3' miRNA: 3'- cCCGCac--CA-CGGGCUGgGGCg-GGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 26598 | 0.73 | 0.182141 |
Target: 5'- cGGcGaCGUGGaGCUCGACCgCGCCUGCUu -3' miRNA: 3'- -CC-C-GCACCaCGGGCUGGgGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 26968 | 0.67 | 0.454283 |
Target: 5'- uGGCGgcc-GCCCucuccgacgagGGCCCCGCCggCGCCg -3' miRNA: 3'- cCCGCaccaCGGG-----------CUGGGGCGG--GCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 27158 | 0.68 | 0.392502 |
Target: 5'- cGGGC-UGGcggccgcgcgcgccgUGCCgccgccgcgCGGCCCCGCCgccgCGCCg -3' miRNA: 3'- -CCCGcACC---------------ACGG---------GCUGGGGCGG----GCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 27257 | 0.66 | 0.519157 |
Target: 5'- -cGCGcUGGUGCUCaugcgccugcgcgggGACCuCCGCgUCGCCg -3' miRNA: 3'- ccCGC-ACCACGGG---------------CUGG-GGCG-GGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 27517 | 0.67 | 0.429252 |
Target: 5'- cGGCGcGcccGCCCGccgccGCCgCCGCCUGCCc -3' miRNA: 3'- cCCGCaCca-CGGGC-----UGG-GGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 27570 | 0.74 | 0.169874 |
Target: 5'- cGGCccGGcGCCgCGGCCCCGCCC-CCg -3' miRNA: 3'- cCCGcaCCaCGG-GCUGGGGCGGGcGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 27604 | 0.7 | 0.297751 |
Target: 5'- cGGCcccGG-GCCCGcGCCCgCgGCCCGCCg -3' miRNA: 3'- cCCGca-CCaCGGGC-UGGG-G-CGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 27732 | 0.67 | 0.471402 |
Target: 5'- gGGGCGgGGgGCCgCGGuCagcgggCCGCCCGCg -3' miRNA: 3'- -CCCGCaCCaCGG-GCU-Gg-----GGCGGGCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 27773 | 0.68 | 0.413024 |
Target: 5'- gGGGCG-GG----CGGCCCaGCCCGCCg -3' miRNA: 3'- -CCCGCaCCacggGCUGGGgCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 27991 | 0.77 | 0.104724 |
Target: 5'- cGGCGaGGaGCUCGgcggcgccucccccGCCCCGCCCGCCu -3' miRNA: 3'- cCCGCaCCaCGGGC--------------UGGGGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 28536 | 0.66 | 0.494134 |
Target: 5'- cGGCGgcagcgagcgGCCCGACCUCGggCGCCg -3' miRNA: 3'- cCCGCacca------CGGGCUGGGGCggGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 28751 | 0.68 | 0.413024 |
Target: 5'- -cGCGccGG-GCCCGACgCCCugccGCCCGCg -3' miRNA: 3'- ccCGCa-CCaCGGGCUG-GGG----CGGGCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 28943 | 0.7 | 0.279129 |
Target: 5'- uGGagGUGGccgccGCCgCGAgCCCCGCCCGCg -3' miRNA: 3'- cCCg-CACCa----CGG-GCU-GGGGCGGGCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 29091 | 0.67 | 0.429252 |
Target: 5'- cGGCGUcGGcGCCCcgagcGACCgCCGgcgggaCCCGCCc -3' miRNA: 3'- cCCGCA-CCaCGGG-----CUGG-GGC------GGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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