miRNA display CGI


Results 21 - 40 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 153078 0.74 0.169874
Target:  5'- cGGCccGGcGCCgCGGCCCCGCCC-CCg -3'
miRNA:   3'- cCCGcaCCaCGG-GCUGGGGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 153025 0.67 0.429252
Target:  5'- cGGCGcGcccGCCCGccgccGCCgCCGCCUGCCc -3'
miRNA:   3'- cCCGCaCca-CGGGC-----UGG-GGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 152765 0.66 0.519157
Target:  5'- -cGCGcUGGUGCUCaugcgccugcgcgggGACCuCCGCgUCGCCg -3'
miRNA:   3'- ccCGC-ACCACGGG---------------CUGG-GGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 152667 0.68 0.384788
Target:  5'- cGGGC-UGGcggccgcgcgcgccgUGCCgcgccgcgCGGCCCCGCCgccgCGCCg -3'
miRNA:   3'- -CCCGcACC---------------ACGG--------GCUGGGGCGG----GCGG- -5'
21519 5' -66.1 NC_004812.1 + 152622 0.7 0.317323
Target:  5'- cGGCGagagcaGGUGCCCGGgCCgGCgCGCg -3'
miRNA:   3'- cCCGCa-----CCACGGGCUgGGgCGgGCGg -5'
21519 5' -66.1 NC_004812.1 + 152477 0.67 0.454283
Target:  5'- uGGCGgcc-GCCCucuccgacgagGGCCCCGCCggCGCCg -3'
miRNA:   3'- cCCGCaccaCGGG-----------CUGGGGCGG--GCGG- -5'
21519 5' -66.1 NC_004812.1 + 152405 0.66 0.524585
Target:  5'- -cGCGUGGgGCCgGGCgCCGCgggggCGCCc -3'
miRNA:   3'- ccCGCACCaCGGgCUGgGGCGg----GCGG- -5'
21519 5' -66.1 NC_004812.1 + 152106 0.73 0.182141
Target:  5'- cGGcGaCGUGGaGCUCGACCgCGCCUGCUu -3'
miRNA:   3'- -CC-C-GCACCaCGGGCUGGgGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 151980 0.69 0.352059
Target:  5'- cGGGCGU----CCCG-CCCC-CCCGCCc -3'
miRNA:   3'- -CCCGCAccacGGGCuGGGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 151848 0.67 0.421091
Target:  5'- cGGCGagccGUgGCCCGGCgCCGagCCGCCg -3'
miRNA:   3'- cCCGCac--CA-CGGGCUGgGGCg-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 151797 0.7 0.285231
Target:  5'- gGGGCcgcGUG-CCGACCCCgcGCCCGCa -3'
miRNA:   3'- -CCCGcacCACgGGCUGGGG--CGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 151565 0.7 0.290813
Target:  5'- cGGGCccccGUGaCCGcggcgcuGCCCCGCCUGCCg -3'
miRNA:   3'- -CCCGcac-CACgGGC-------UGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 151563 0.66 0.497675
Target:  5'- gGGGCGcGGcGCCCucgcgcGCCCCcgGCCCGg- -3'
miRNA:   3'- -CCCGCaCCaCGGGc-----UGGGG--CGGGCgg -5'
21519 5' -66.1 NC_004812.1 + 151248 0.7 0.285231
Target:  5'- cGGUGUGG-GUcaUCGACgCCGCCgCGCCc -3'
miRNA:   3'- cCCGCACCaCG--GGCUGgGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 151218 0.7 0.285231
Target:  5'- cGGCGacGccCCCGGCCCCGCgCCGCg -3'
miRNA:   3'- cCCGCacCacGGGCUGGGGCG-GGCGg -5'
21519 5' -66.1 NC_004812.1 + 151213 0.68 0.381731
Target:  5'- -cGCGUcccuGGgagacCCCGACCCCccuCCCGCCg -3'
miRNA:   3'- ccCGCA----CCac---GGGCUGGGGc--GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 151168 0.7 0.30417
Target:  5'- cGGGCGcGaGUccucuuccGCCCcucuggggGGCCCCcgGCCCGCCg -3'
miRNA:   3'- -CCCGCaC-CA--------CGGG--------CUGGGG--CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 151099 0.68 0.374158
Target:  5'- cGGCG-GGgacGCCUu-CCCCGCggCCGCCg -3'
miRNA:   3'- cCCGCaCCa--CGGGcuGGGGCG--GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 151051 0.7 0.30417
Target:  5'- cGGGCGcGaGUccuccuccGCCCcucuggggGGCCCCcgGCCCGCCg -3'
miRNA:   3'- -CCCGCaC-CA--------CGGG--------CUGGGG--CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 150976 0.71 0.244684
Target:  5'- cGGCGaccccGG-GCCCGGCCCCcGagCCGCCu -3'
miRNA:   3'- cCCGCa----CCaCGGGCUGGGG-Cg-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.