miRNA display CGI


Results 61 - 80 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 145818 0.68 0.405053
Target:  5'- uGGGCGgcgGG-GUCggCGGCCCaCGCCCGg- -3'
miRNA:   3'- -CCCGCa--CCaCGG--GCUGGG-GCGGGCgg -5'
21519 5' -66.1 NC_004812.1 + 145784 0.65 0.530035
Target:  5'- cGGCGUGGccgaagaccugcgUGUCCucgcggagacgugcGGCCCCGCCggaGCg -3'
miRNA:   3'- cCCGCACC-------------ACGGG--------------CUGGGGCGGg--CGg -5'
21519 5' -66.1 NC_004812.1 + 144665 0.71 0.25017
Target:  5'- aGGGCGggacggaGGaaCCCGccacCCCCGcCCCGCCg -3'
miRNA:   3'- -CCCGCa------CCacGGGCu---GGGGC-GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 144474 0.67 0.454283
Target:  5'- -aGCGg---GCCCGGCgCCGCgCGCCc -3'
miRNA:   3'- ccCGCaccaCGGGCUGgGGCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 143570 0.68 0.381731
Target:  5'- gGGGCGaccgGGgccgGCCCcgcGACCCCcggcgaucaGgCCGCCu -3'
miRNA:   3'- -CCCGCa---CCa---CGGG---CUGGGG---------CgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 142932 0.67 0.440833
Target:  5'- --uCGUGGUGCCCGAgagcuucaucacgaaCCCgGCCaaccuGCCc -3'
miRNA:   3'- cccGCACCACGGGCU---------------GGGgCGGg----CGG- -5'
21519 5' -66.1 NC_004812.1 + 142841 0.66 0.497675
Target:  5'- uGGCGUucacccugugccGGUcgacccgaaggGCCCagaGCCCCGCCuaCGCCg -3'
miRNA:   3'- cCCGCA------------CCA-----------CGGGc--UGGGGCGG--GCGG- -5'
21519 5' -66.1 NC_004812.1 + 142229 0.67 0.429252
Target:  5'- uGGCcguauaccUGGUGCgCCG-CCgCGCCCGCg -3'
miRNA:   3'- cCCGc-------ACCACG-GGCuGGgGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 142061 0.69 0.351338
Target:  5'- cGGGCGacGaGCCCGcCCCCGCggucgcggcccagCUGCCg -3'
miRNA:   3'- -CCCGCacCaCGGGCuGGGGCG-------------GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 141593 0.68 0.366688
Target:  5'- cGGCcccugGGcGCCUG-CCCCGUCCGCa -3'
miRNA:   3'- cCCGca---CCaCGGGCuGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 140888 0.71 0.252393
Target:  5'- uGGGUGgcgGGacgcgcgggggcaucUGCCCGuACCugCCGCCCGCg -3'
miRNA:   3'- -CCCGCa--CC---------------ACGGGC-UGG--GGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 140687 0.67 0.470538
Target:  5'- aGGGCGgGGUcgaccgcGgCCGagucgaugaguGCCCC-CCCGCCu -3'
miRNA:   3'- -CCCGCaCCA-------CgGGC-----------UGGGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 140684 0.7 0.317323
Target:  5'- -cGCGUGac-CCCGcgaccccacCCCCGCCCGCCg -3'
miRNA:   3'- ccCGCACcacGGGCu--------GGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 140656 0.75 0.134169
Target:  5'- gGGGCGUccGGUcGCCCGGCCgaaGCCCGgCa -3'
miRNA:   3'- -CCCGCA--CCA-CGGGCUGGgg-CGGGCgG- -5'
21519 5' -66.1 NC_004812.1 + 140621 0.67 0.428432
Target:  5'- uGGCGcGGgGCCgcgggguCGGCgCCGCCgGCCg -3'
miRNA:   3'- cCCGCaCCaCGG-------GCUGgGGCGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 140569 0.66 0.488843
Target:  5'- cGGUGaucgGGgGCCUcugcgcgcuGACCCUGgCCGCCa -3'
miRNA:   3'- cCCGCa---CCaCGGG---------CUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 140404 0.66 0.480083
Target:  5'- cGGCGcgcgGCCCGGgUCCGCCgCGCg -3'
miRNA:   3'- cCCGCaccaCGGGCUgGGGCGG-GCGg -5'
21519 5' -66.1 NC_004812.1 + 139890 0.72 0.217263
Target:  5'- cGGGCGagcGGga-CCGGCCCCGCggucgcucgcgcacCCGCCg -3'
miRNA:   3'- -CCCGCa--CCacgGGCUGGGGCG--------------GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 139429 0.71 0.255756
Target:  5'- gGGGCGgccGGUG-CUGGCCCUGUCC-CCu -3'
miRNA:   3'- -CCCGCa--CCACgGGCUGGGGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 138995 0.77 0.10049
Target:  5'- cGGCGgagcGGUucGCCCGGgCCCGCCuCGCCc -3'
miRNA:   3'- cCCGCa---CCA--CGGGCUgGGGCGG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.