miRNA display CGI


Results 81 - 100 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 138761 0.74 0.169874
Target:  5'- cGGuGCcucuGUGGcGCUCGAUCCCGgCCGCCu -3'
miRNA:   3'- -CC-CG----CACCaCGGGCUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 138541 0.67 0.436677
Target:  5'- cGGCGgcucGGUcuccguucccauaGaCCUGuauCCCCGCCCGCUc -3'
miRNA:   3'- cCCGCa---CCA-------------C-GGGCu--GGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 138378 0.66 0.488843
Target:  5'- cGGGCG-GGgGCgCGuACgCCGCCCgggugGCCu -3'
miRNA:   3'- -CCCGCaCCaCGgGC-UGgGGCGGG-----CGG- -5'
21519 5' -66.1 NC_004812.1 + 138240 0.7 0.310693
Target:  5'- --aUGUGGgGCCCGcggGCCCgGCgCCGCCg -3'
miRNA:   3'- cccGCACCaCGGGC---UGGGgCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 138147 0.76 0.113428
Target:  5'- cGGGCGcGGgGCCgCGcccCCCCGCCgCGCCa -3'
miRNA:   3'- -CCCGCaCCaCGG-GCu--GGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 138102 0.66 0.497675
Target:  5'- uGGCGggaugGGgucuccgGCUCGACgCCCcUCCGCCc -3'
miRNA:   3'- cCCGCa----CCa------CGGGCUG-GGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 138054 0.69 0.337848
Target:  5'- cGGCGgagcGG-GCCCGcGCCgCGCUgGCCg -3'
miRNA:   3'- cCCGCa---CCaCGGGC-UGGgGCGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 138048 0.66 0.524585
Target:  5'- cGGGCGggcaccacGGcuCCCGGCaaCGCgCCGCCa -3'
miRNA:   3'- -CCCGCa-------CCacGGGCUGggGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 137862 0.66 0.524585
Target:  5'- cGGaCGaGGUGCgCCGcgaguACCCCGCCguCGCg -3'
miRNA:   3'- cCC-GCaCCACG-GGC-----UGGGGCGG--GCGg -5'
21519 5' -66.1 NC_004812.1 + 137779 0.7 0.310693
Target:  5'- cGGGCGgc--GCgCaACCgCCGCCCGCCg -3'
miRNA:   3'- -CCCGCaccaCGgGcUGG-GGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 137550 0.69 0.324059
Target:  5'- cGGGCcUGG-GCCgCGGUCUCGgCCGCCg -3'
miRNA:   3'- -CCCGcACCaCGG-GCUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 137503 0.67 0.471402
Target:  5'- uGGCGgGG-GCCUGGCCCgCGgCCggaGCCc -3'
miRNA:   3'- cCCGCaCCaCGGGCUGGG-GCgGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 137050 0.66 0.523679
Target:  5'- cGGgGUGGUGgCCGGCCUgGgcuucgcgauccaCCgCGCCc -3'
miRNA:   3'- cCCgCACCACgGGCUGGGgC-------------GG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 136871 0.69 0.357861
Target:  5'- cGGGCugGUGGcgcggaucgagggucUGCCCGACggccggucgccggcgCCgCGCgCCGCCg -3'
miRNA:   3'- -CCCG--CACC---------------ACGGGCUG---------------GG-GCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 136712 0.68 0.389405
Target:  5'- cGGCGcGGgccGCCgGucCCCCGCCgccgCGCCg -3'
miRNA:   3'- cCCGCaCCa--CGGgCu-GGGGCGG----GCGG- -5'
21519 5' -66.1 NC_004812.1 + 136480 0.69 0.344191
Target:  5'- cGGcCG-GG-GCCCGGuccgcucCCCCGCgCGCCg -3'
miRNA:   3'- cCC-GCaCCaCGGGCU-------GGGGCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 136297 0.66 0.51555
Target:  5'- uGGGgGcGGUGCCUGcgcgcgcgcuGCgCCgGCgCGCCg -3'
miRNA:   3'- -CCCgCaCCACGGGC----------UG-GGgCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 136266 0.69 0.352059
Target:  5'- -cGCccGG-GCCCGugCCCGCCCuGCa -3'
miRNA:   3'- ccCGcaCCaCGGGCugGGGCGGG-CGg -5'
21519 5' -66.1 NC_004812.1 + 135994 0.7 0.310693
Target:  5'- cGGcGCGUGacggacGCCCugagcgggcGCCCCGCCCGCg -3'
miRNA:   3'- -CC-CGCACca----CGGGc--------UGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 134622 0.69 0.337848
Target:  5'- aGGGCGgcau-CCUGGCCCUGCCCcCCu -3'
miRNA:   3'- -CCCGCaccacGGGCUGGGGCGGGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.