miRNA display CGI


Results 101 - 120 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 134091 0.66 0.506579
Target:  5'- gGGGCGccgacgucgcGGUGCgUGACgguggUCCGCgCGCCg -3'
miRNA:   3'- -CCCGCa---------CCACGgGCUG-----GGGCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 133920 0.69 0.343482
Target:  5'- cGGGCGggggggacgcggGGUccGCUCGGggcUCCCGCCgGCCc -3'
miRNA:   3'- -CCCGCa-----------CCA--CGGGCU---GGGGCGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 133687 0.66 0.51555
Target:  5'- uGGGCGUccaggcgcGGggGCgCGGCCaCGCCC-CCg -3'
miRNA:   3'- -CCCGCA--------CCa-CGgGCUGGgGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 133677 0.69 0.352059
Target:  5'- cGGGCGaGGgacucaCCgCGACCCCacGCuCCGCCc -3'
miRNA:   3'- -CCCGCaCCac----GG-GCUGGGG--CG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 133211 0.66 0.488843
Target:  5'- cGGaCGcccGUcGCCgGACgCUCGCCCGCCg -3'
miRNA:   3'- cCC-GCac-CA-CGGgCUG-GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 133109 0.67 0.421091
Target:  5'- cGGCGcc--GCCgCG-CCCgGCCCGCCg -3'
miRNA:   3'- cCCGCaccaCGG-GCuGGGgCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 133067 0.69 0.330901
Target:  5'- cGGGCGcgGGgggcgGUCCcGCCCC-CaCCGCCg -3'
miRNA:   3'- -CCCGCa-CCa----CGGGcUGGGGcG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 132772 0.71 0.273131
Target:  5'- aGGGCGgcgccGGgccgGgCCGGCCCCGggucgCCGCCc -3'
miRNA:   3'- -CCCGCa----CCa---CgGGCUGGGGCg----GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 131777 0.68 0.388633
Target:  5'- cGGCGc-GUGCCgcgauccggggguCGAUCCUGCCCGaCCa -3'
miRNA:   3'- cCCGCacCACGG-------------GCUGGGGCGGGC-GG- -5'
21519 5' -66.1 NC_004812.1 + 131568 0.7 0.320005
Target:  5'- cGGGCGagcUGGUGCaCCGcgaGCCCaucuucgccaaccCCCGCCa -3'
miRNA:   3'- -CCCGC---ACCACG-GGC---UGGGgc-----------GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 131521 0.68 0.381731
Target:  5'- cGGcGCGcGGcgGCgCCG-CCCCgucgaggaGCCCGCCg -3'
miRNA:   3'- -CC-CGCaCCa-CG-GGCuGGGG--------CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 131385 0.7 0.297751
Target:  5'- -cGCGcGGUcGCCgGccucauauACCCCGUCCGCCg -3'
miRNA:   3'- ccCGCaCCA-CGGgC--------UGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 131299 0.69 0.324059
Target:  5'- cGGCGUuccucCUCGACCCCGCuCCGUCg -3'
miRNA:   3'- cCCGCAccac-GGGCUGGGGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 130761 0.67 0.44585
Target:  5'- gGGGCGcgccgagucGGccGCCgCGGCCCCGCgCUcgGCCg -3'
miRNA:   3'- -CCCGCa--------CCa-CGG-GCUGGGGCG-GG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 130723 0.66 0.488843
Target:  5'- uGGGCGcgGGcGCCgCGGagggCCGgCCGCCg -3'
miRNA:   3'- -CCCGCa-CCaCGG-GCUgg--GGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 130573 0.71 0.273131
Target:  5'- gGGGCGUccGGggGCCCcuggacguggaGCCCCuccggGCCCGCCu -3'
miRNA:   3'- -CCCGCA--CCa-CGGGc----------UGGGG-----CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 130566 0.74 0.158351
Target:  5'- aGGGCGccGcGCCCccGGCCCCGgcCCCGCCg -3'
miRNA:   3'- -CCCGCacCaCGGG--CUGGGGC--GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 130392 0.67 0.417853
Target:  5'- uGGCGUcGcGCCCGGCCacggcggcgcgcgCGCgCCGCCg -3'
miRNA:   3'- cCCGCAcCaCGGGCUGGg------------GCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 130316 0.7 0.310693
Target:  5'- cGGGCGUagaaGGcGCCCGagGCCUCGUCgGCg -3'
miRNA:   3'- -CCCGCA----CCaCGGGC--UGGGGCGGgCGg -5'
21519 5' -66.1 NC_004812.1 + 130260 0.71 0.273131
Target:  5'- gGGGCGgcggcucGGcGCCgGGCCaCgGCUCGCCg -3'
miRNA:   3'- -CCCGCa------CCaCGGgCUGG-GgCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.