Results 41 - 60 of 686 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 1880 | 0.78 | 0.088953 |
Target: 5'- uGGCccgGGcGCCCgGGCCCCGCCCGCg -3' miRNA: 3'- cCCGca-CCaCGGG-CUGGGGCGGGCGg -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 110296 | 0.78 | 0.088953 |
Target: 5'- aGGGUGUGccUGCCCGugCCCGCcCCGUa -3' miRNA: 3'- -CCCGCACc-ACGGGCugGGGCG-GGCGg -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 23823 | 0.81 | 0.055624 |
Target: 5'- gGGGCGgcgacccgGGgccgGCCCGGCCCgGCgCCGCCc -3' miRNA: 3'- -CCCGCa-------CCa---CGGGCUGGGgCG-GGCGG- -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 51190 | 0.81 | 0.051613 |
Target: 5'- cGGGCGcgGGcGCCgGGCCCCGCCgagCGCCg -3' miRNA: 3'- -CCCGCa-CCaCGGgCUGGGGCGG---GCGG- -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 111577 | 0.83 | 0.040177 |
Target: 5'- cGGCGUGGUgaGCCCGGCCCacaagaugguggCGCCCGCg -3' miRNA: 3'- cCCGCACCA--CGGGCUGGG------------GCGGGCGg -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 105151 | 0.77 | 0.108075 |
Target: 5'- uGGuaGUGGUGgCCGuagcGCCCCGCCUGCg -3' miRNA: 3'- -CCcgCACCACgGGC----UGGGGCGGGCGg -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 40457 | 0.77 | 0.108075 |
Target: 5'- gGGGCGUacGGgcgGCCCGucuCCCCGUaauacaCCGCCa -3' miRNA: 3'- -CCCGCA--CCa--CGGGCu--GGGGCG------GGCGG- -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 84440 | 0.75 | 0.151065 |
Target: 5'- aGGGgGUuccGG-GUCCG-CCUCGCCCGCCu -3' miRNA: 3'- -CCCgCA---CCaCGGGCuGGGGCGGGCGG- -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 126811 | 0.75 | 0.147538 |
Target: 5'- aGGCG-GG-GCgCCGACCCCcgggcCCCGCCg -3' miRNA: 3'- cCCGCaCCaCG-GGCUGGGGc----GGGCGG- -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 31750 | 0.75 | 0.147538 |
Target: 5'- gGGGCGgGG-GCgCGGCgCCCGCCCcacGCCa -3' miRNA: 3'- -CCCGCaCCaCGgGCUG-GGGCGGG---CGG- -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 18343 | 0.75 | 0.144086 |
Target: 5'- aGGGCGcGGcGCgCGACCgCGgCCGCCg -3' miRNA: 3'- -CCCGCaCCaCGgGCUGGgGCgGGCGG- -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 8399 | 0.75 | 0.140708 |
Target: 5'- gGGGCGcggcgGGgGCUCGGCCCCGgCCGUa -3' miRNA: 3'- -CCCGCa----CCaCGGGCUGGGGCgGGCGg -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 150695 | 0.75 | 0.140708 |
Target: 5'- cGGGCG-GcGUcGCggCGGCUCCGCCCGCCg -3' miRNA: 3'- -CCCGCaC-CA-CGg-GCUGGGGCGGGCGG- -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 125190 | 0.75 | 0.137402 |
Target: 5'- cGGGCGcgcGG-GCCCG-CCCCGgCCGCg -3' miRNA: 3'- -CCCGCa--CCaCGGGCuGGGGCgGGCGg -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 54537 | 0.75 | 0.133212 |
Target: 5'- -cGCGuUGGUGCCCGgcgcgcccggcgcgGCCCCGgCCuCGCCa -3' miRNA: 3'- ccCGC-ACCACGGGC--------------UGGGGC-GG-GCGG- -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 8057 | 0.75 | 0.131005 |
Target: 5'- cGGCGcccGGccgGCCCgcGACCCCGCCgCGCCc -3' miRNA: 3'- cCCGCa--CCa--CGGG--CUGGGGCGG-GCGG- -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 33020 | 0.76 | 0.119027 |
Target: 5'- cGGGCGcgcGuGUGCUCGGCCgCCGCCC-CCg -3' miRNA: 3'- -CCCGCa--C-CACGGGCUGG-GGCGGGcGG- -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 138147 | 0.76 | 0.113428 |
Target: 5'- cGGGCGcGGgGCCgCGcccCCCCGCCgCGCCa -3' miRNA: 3'- -CCCGCaCCaCGG-GCu--GGGGCGG-GCGG- -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 2953 | 0.76 | 0.113428 |
Target: 5'- cGGGCGcaccGUGCgCGcccucuCCCCGCCCGCCc -3' miRNA: 3'- -CCCGCac--CACGgGCu-----GGGGCGGGCGG- -5' |
|||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 116498 | 0.77 | 0.111797 |
Target: 5'- gGGGCcgggGGUcgcggacggacgcgcGCCCGGCCgcccgCCGCCCGCCg -3' miRNA: 3'- -CCCGca--CCA---------------CGGGCUGG-----GGCGGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home