miRNA display CGI


Results 61 - 80 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 33020 0.76 0.119027
Target:  5'- cGGGCGcgcGuGUGCUCGGCCgCCGCCC-CCg -3'
miRNA:   3'- -CCCGCa--C-CACGGGCUGG-GGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 8057 0.75 0.131005
Target:  5'- cGGCGcccGGccgGCCCgcGACCCCGCCgCGCCc -3'
miRNA:   3'- cCCGCa--CCa--CGGG--CUGGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 50901 0.74 0.162111
Target:  5'- cGGUGUucGGgGcCCCGGCCCCGCcacCCGCCu -3'
miRNA:   3'- cCCGCA--CCaC-GGGCUGGGGCG---GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 82208 0.74 0.162111
Target:  5'- cGGaGCG-GGcugGCCCGGCCCgCGCCgaagCGCCg -3'
miRNA:   3'- -CC-CGCaCCa--CGGGCUGGG-GCGG----GCGG- -5'
21519 5' -66.1 NC_004812.1 + 73768 0.74 0.165952
Target:  5'- gGGGCGccgGGUGCCCGcggGCUCCGCgaGCg -3'
miRNA:   3'- -CCCGCa--CCACGGGC---UGGGGCGggCGg -5'
21519 5' -66.1 NC_004812.1 + 138761 0.74 0.169874
Target:  5'- cGGuGCcucuGUGGcGCUCGAUCCCGgCCGCCu -3'
miRNA:   3'- -CC-CG----CACCaCGGGCUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 524 0.74 0.169874
Target:  5'- gGGGCG-GGcccgcgcGCCCGGgCCCuCCCGCCu -3'
miRNA:   3'- -CCCGCaCCa------CGGGCUgGGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 117668 0.74 0.169874
Target:  5'- cGGGCGccggggGGUGCCggcggaggcCGGCCCgCGCCCcCCg -3'
miRNA:   3'- -CCCGCa-----CCACGG---------GCUGGG-GCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 153078 0.74 0.169874
Target:  5'- cGGCccGGcGCCgCGGCCCCGCCC-CCg -3'
miRNA:   3'- cCCGcaCCaCGG-GCUGGGGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 67792 0.74 0.169874
Target:  5'- cGGGCGgcuucgggggGGgcggGCCCGGcagccCCCCGUCCGUCc -3'
miRNA:   3'- -CCCGCa---------CCa---CGGGCU-----GGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 70981 0.74 0.159845
Target:  5'- aGGCGUGGgGCCgGAacgccuccagacggCCCGCUCGCCg -3'
miRNA:   3'- cCCGCACCaCGGgCUg-------------GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 130566 0.74 0.158351
Target:  5'- aGGGCGccGcGCCCccGGCCCCGgcCCCGCCg -3'
miRNA:   3'- -CCCGCacCaCGGG--CUGGGGC--GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 54537 0.75 0.133212
Target:  5'- -cGCGuUGGUGCCCGgcgcgcccggcgcgGCCCCGgCCuCGCCa -3'
miRNA:   3'- ccCGC-ACCACGGGC--------------UGGGGC-GG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 125190 0.75 0.137402
Target:  5'- cGGGCGcgcGG-GCCCG-CCCCGgCCGCg -3'
miRNA:   3'- -CCCGCa--CCaCGGGCuGGGGCgGGCGg -5'
21519 5' -66.1 NC_004812.1 + 150695 0.75 0.140708
Target:  5'- cGGGCG-GcGUcGCggCGGCUCCGCCCGCCg -3'
miRNA:   3'- -CCCGCaC-CA-CGg-GCUGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 8399 0.75 0.140708
Target:  5'- gGGGCGcggcgGGgGCUCGGCCCCGgCCGUa -3'
miRNA:   3'- -CCCGCa----CCaCGGGCUGGGGCgGGCGg -5'
21519 5' -66.1 NC_004812.1 + 18343 0.75 0.144086
Target:  5'- aGGGCGcGGcGCgCGACCgCGgCCGCCg -3'
miRNA:   3'- -CCCGCaCCaCGgGCUGGgGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 31750 0.75 0.147538
Target:  5'- gGGGCGgGG-GCgCGGCgCCCGCCCcacGCCa -3'
miRNA:   3'- -CCCGCaCCaCGgGCUG-GGGCGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 126811 0.75 0.147538
Target:  5'- aGGCG-GG-GCgCCGACCCCcgggcCCCGCCg -3'
miRNA:   3'- cCCGCaCCaCG-GGCUGGGGc----GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 84440 0.75 0.151065
Target:  5'- aGGGgGUuccGG-GUCCG-CCUCGCCCGCCu -3'
miRNA:   3'- -CCCgCA---CCaCGGGCuGGGGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.