miRNA display CGI


Results 101 - 120 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 108289 0.72 0.209041
Target:  5'- cGGGCGgGGUcgggcaccacGCCCGAgCCCGCaCGCg -3'
miRNA:   3'- -CCCGCaCCA----------CGGGCUgGGGCGgGCGg -5'
21519 5' -66.1 NC_004812.1 + 3450 0.72 0.213844
Target:  5'- --cCGUGGUcCCCGuggccCCCCGCCCGCg -3'
miRNA:   3'- cccGCACCAcGGGCu----GGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 155157 0.72 0.213844
Target:  5'- cGGCGUcgccgccGUGCCCGGCCCUcgcgGCCCcgGCCc -3'
miRNA:   3'- cCCGCAc------CACGGGCUGGGG----CGGG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 49909 0.72 0.218742
Target:  5'- aGGGCcccccgGG-GCCCGACgCCGaCCGCCc -3'
miRNA:   3'- -CCCGca----CCaCGGGCUGgGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 68187 0.72 0.218742
Target:  5'- cGGGCGgGGgcgcGCCgGACgCCCGgCCGCg -3'
miRNA:   3'- -CCCGCaCCa---CGGgCUG-GGGCgGGCGg -5'
21519 5' -66.1 NC_004812.1 + 18560 0.73 0.19075
Target:  5'- cGGCGcGG-GCCCG-CUCCGCcgCCGCCg -3'
miRNA:   3'- cCCGCaCCaCGGGCuGGGGCG--GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 152106 0.73 0.182141
Target:  5'- cGGcGaCGUGGaGCUCGACCgCGCCUGCUu -3'
miRNA:   3'- -CC-C-GCACCaCGGGCUGGgGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 50901 0.74 0.162111
Target:  5'- cGGUGUucGGgGcCCCGGCCCCGCcacCCGCCu -3'
miRNA:   3'- cCCGCA--CCaC-GGGCUGGGGCG---GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 82208 0.74 0.162111
Target:  5'- cGGaGCG-GGcugGCCCGGCCCgCGCCgaagCGCCg -3'
miRNA:   3'- -CC-CGCaCCa--CGGGCUGGG-GCGG----GCGG- -5'
21519 5' -66.1 NC_004812.1 + 73768 0.74 0.165952
Target:  5'- gGGGCGccgGGUGCCCGcggGCUCCGCgaGCg -3'
miRNA:   3'- -CCCGCa--CCACGGGC---UGGGGCGggCGg -5'
21519 5' -66.1 NC_004812.1 + 138761 0.74 0.169874
Target:  5'- cGGuGCcucuGUGGcGCUCGAUCCCGgCCGCCu -3'
miRNA:   3'- -CC-CG----CACCaCGGGCUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 524 0.74 0.169874
Target:  5'- gGGGCG-GGcccgcgcGCCCGGgCCCuCCCGCCu -3'
miRNA:   3'- -CCCGCaCCa------CGGGCUgGGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 117668 0.74 0.169874
Target:  5'- cGGGCGccggggGGUGCCggcggaggcCGGCCCgCGCCCcCCg -3'
miRNA:   3'- -CCCGCa-----CCACGG---------GCUGGG-GCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 153078 0.74 0.169874
Target:  5'- cGGCccGGcGCCgCGGCCCCGCCC-CCg -3'
miRNA:   3'- cCCGcaCCaCGG-GCUGGGGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 67792 0.74 0.169874
Target:  5'- cGGGCGgcuucgggggGGgcggGCCCGGcagccCCCCGUCCGUCc -3'
miRNA:   3'- -CCCGCa---------CCa---CGGGCU-----GGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 112255 0.74 0.173879
Target:  5'- gGGGCGUGGUugguggGCggGGCCaCCaGCCCGCCc -3'
miRNA:   3'- -CCCGCACCA------CGggCUGG-GG-CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 73239 0.74 0.173879
Target:  5'- cGGGCG-GGcgGCCCGcCCCCaggcgGgCCGCCa -3'
miRNA:   3'- -CCCGCaCCa-CGGGCuGGGG-----CgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 74369 0.73 0.177967
Target:  5'- cGGGCGgcggGGU-CCCG-CCCgCGCCCGUUu -3'
miRNA:   3'- -CCCGCa---CCAcGGGCuGGG-GCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 95792 0.73 0.182141
Target:  5'- gGGGCGgugcUGGUGaagugaCCG-CCCCGCCCGaCg -3'
miRNA:   3'- -CCCGC----ACCACg-----GGCuGGGGCGGGCgG- -5'
21519 5' -66.1 NC_004812.1 + 117971 0.73 0.182141
Target:  5'- aGGCG-GGcGCCCccGGCCUCGCCCGgCg -3'
miRNA:   3'- cCCGCaCCaCGGG--CUGGGGCGGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.