miRNA display CGI


Results 21 - 40 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 87574 0.76 0.126086
Target:  5'- gGGGCG-GGUuguuuggcagauaggGCCCGGCCUCGCacuccCCGCCc -3'
miRNA:   3'- -CCCGCaCCA---------------CGGGCUGGGGCG-----GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 77266 0.76 0.121922
Target:  5'- gGGGCGccgcUGGcgcUGCCCGcCCCCGCCCcauCCg -3'
miRNA:   3'- -CCCGC----ACC---ACGGGCuGGGGCGGGc--GG- -5'
21519 5' -66.1 NC_004812.1 + 27991 0.77 0.104724
Target:  5'- cGGCGaGGaGCUCGgcggcgccucccccGCCCCGCCCGCCu -3'
miRNA:   3'- cCCGCaCCaCGGGC--------------UGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 105420 0.8 0.066191
Target:  5'- cGGCG-GG-GCCCGgcGCCCgCGCCCGCCc -3'
miRNA:   3'- cCCGCaCCaCGGGC--UGGG-GCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 128098 0.74 0.154669
Target:  5'- gGGGC-UGGUcuuaggugGCCgCGGagcccccuuuCCCCGCCCGCCg -3'
miRNA:   3'- -CCCGcACCA--------CGG-GCU----------GGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 38958 0.75 0.131005
Target:  5'- cGGCGcccGGccgGCCCgcGACCCCGCCgCGCCc -3'
miRNA:   3'- cCCGCa--CCa--CGGG--CUGGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 56441 0.76 0.113428
Target:  5'- cGGGCGgcGG-GCCUGgcggcgcgaugaGCCCCGcCCCGCCg -3'
miRNA:   3'- -CCCGCa-CCaCGGGC------------UGGGGC-GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 83402 0.84 0.034547
Target:  5'- aGGGCGgccgcgaGGacGuCCCGGCCCCGCCCGCCc -3'
miRNA:   3'- -CCCGCa------CCa-C-GGGCUGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 82803 0.75 0.131005
Target:  5'- uGGgGUGGgagcgcgggGCgCCGGCgCCCGCCCGCUc -3'
miRNA:   3'- cCCgCACCa--------CG-GGCUG-GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 50145 0.85 0.029695
Target:  5'- -cGCGUGGggggcGCCCGGCUCCGUCCGCCg -3'
miRNA:   3'- ccCGCACCa----CGGGCUGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 101970 0.76 0.115081
Target:  5'- cGGCGacccccgUGGUGagcccgcgggccucUCCGGCCCCGCCCGUCc -3'
miRNA:   3'- cCCGC-------ACCAC--------------GGGCUGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 88423 0.76 0.12791
Target:  5'- cGGGCGUccgGCgCGcCCCCGCCCGCg -3'
miRNA:   3'- -CCCGCAccaCGgGCuGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 57922 0.77 0.108075
Target:  5'- cGGCGcGGcgGUUCGACCgCGCCCGCCc -3'
miRNA:   3'- cCCGCaCCa-CGGGCUGGgGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 91 0.77 0.105489
Target:  5'- cGGGCG-GGcuCCCGGCCCCGCgCGCg -3'
miRNA:   3'- -CCCGCaCCacGGGCUGGGGCGgGCGg -5'
21519 5' -66.1 NC_004812.1 + 32781 0.78 0.088953
Target:  5'- uGGCccgGGcGCCCgGGCCCCGCCCGCg -3'
miRNA:   3'- cCCGca-CCaCGGG-CUGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 18565 0.8 0.067851
Target:  5'- cGGGagcCGUGGUGCCCG-CCCgCGUUCGCCc -3'
miRNA:   3'- -CCC---GCACCACGGGCuGGG-GCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 31425 0.74 0.169874
Target:  5'- gGGGCG-GGcccgcgcGCCCGGgCCCuCCCGCCu -3'
miRNA:   3'- -CCCGCaCCa------CGGGCUgGGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 5057 0.74 0.158351
Target:  5'- aGGGCGccGcGCCCccGGCCCCGgcCCCGCCg -3'
miRNA:   3'- -CCCGCacCaCGGG--CUGGGGC--GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 124483 0.75 0.147538
Target:  5'- cGGcCGUGGcGUCCGGCCuCCGCCagggCGCCa -3'
miRNA:   3'- cCC-GCACCaCGGGCUGG-GGCGG----GCGG- -5'
21519 5' -66.1 NC_004812.1 + 140656 0.75 0.134169
Target:  5'- gGGGCGUccGGUcGCCCGGCCgaaGCCCGgCa -3'
miRNA:   3'- -CCCGCA--CCA-CGGGCUGGgg-CGGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.