miRNA display CGI


Results 61 - 80 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 5057 0.74 0.158351
Target:  5'- aGGGCGccGcGCCCccGGCCCCGgcCCCGCCg -3'
miRNA:   3'- -CCCGCacCaCGGG--CUGGGGC--GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 148569 0.74 0.169874
Target:  5'- cGGGCGccggggGGUGCCggcggaggcCGGCCCgCGCCCcCCg -3'
miRNA:   3'- -CCCGCa-----CCACGG---------GCUGGG-GCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 44343 0.78 0.084699
Target:  5'- uGGGCGggcUGGUGgcCCCGcccaccaaccacGCCCCGUCCGCCc -3'
miRNA:   3'- -CCCGC---ACCAC--GGGC------------UGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 59282 0.78 0.093408
Target:  5'- aGGGuCGcgGGcGCgCGGCaCCCGCCCGCCg -3'
miRNA:   3'- -CCC-GCa-CCaCGgGCUG-GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 156501 0.77 0.105489
Target:  5'- cGGGCG-GGcuCCCGGCCCCGCgCGCg -3'
miRNA:   3'- -CCCGCaCCacGGGCUGGGGCGgGCGg -5'
21519 5' -66.1 NC_004812.1 + 33854 0.76 0.113428
Target:  5'- cGGGCGcaccGUGCgCGcccucuCCCCGCCCGCCc -3'
miRNA:   3'- -CCCGCac--CACGgGCu-----GGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 124860 0.76 0.124883
Target:  5'- gGGGCG-GGcGCCgCGcCCCCGCCCcgcGCCu -3'
miRNA:   3'- -CCCGCaCCaCGG-GCuGGGGCGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 88423 0.76 0.12791
Target:  5'- cGGGCGUccgGCgCGcCCCCGCCCGCg -3'
miRNA:   3'- -CCCGCAccaCGgGCuGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 38958 0.75 0.131005
Target:  5'- cGGCGcccGGccgGCCCgcGACCCCGCCgCGCCc -3'
miRNA:   3'- cCCGCa--CCa--CGGG--CUGGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 39300 0.75 0.140708
Target:  5'- gGGGCGcggcgGGgGCUCGGCCCCGgCCGUa -3'
miRNA:   3'- -CCCGCa----CCaCGGGCUGGGGCgGGCGg -5'
21519 5' -66.1 NC_004812.1 + 82008 0.72 0.239299
Target:  5'- uGGGCGUGGccguggagcGCCaCGACggCCUgcugGCCCGCCu -3'
miRNA:   3'- -CCCGCACCa--------CGG-GCUG--GGG----CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 56322 0.72 0.234013
Target:  5'- aGGGCGgcgcguccGUGCUCGGCCCCcggGCCCGg- -3'
miRNA:   3'- -CCCGCac------CACGGGCUGGGG---CGGGCgg -5'
21519 5' -66.1 NC_004812.1 + 26598 0.73 0.182141
Target:  5'- cGGcGaCGUGGaGCUCGACCgCGCCUGCUu -3'
miRNA:   3'- -CC-C-GCACCaCGGGCUGGgGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 18461 0.73 0.186402
Target:  5'- cGGCGgggGG-GCgCGGCCCCgcGCCCGCg -3'
miRNA:   3'- cCCGCa--CCaCGgGCUGGGG--CGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 94441 0.73 0.191189
Target:  5'- cGGGCGgccgcGG-GCCCGAagaacccggaggccgCCCGCgCCGCCg -3'
miRNA:   3'- -CCCGCa----CCaCGGGCUg--------------GGGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 79754 0.73 0.199256
Target:  5'- gGGGgGUGGacgugccUGCCCGACgCCGCgCagGCCg -3'
miRNA:   3'- -CCCgCACC-------ACGGGCUGgGGCG-Gg-CGG- -5'
21519 5' -66.1 NC_004812.1 + 35713 0.73 0.204331
Target:  5'- cGGGCGcgGGgucgGCaCgCGGCCCCGaCCCaGCCc -3'
miRNA:   3'- -CCCGCa-CCa---CG-G-GCUGGGGC-GGG-CGG- -5'
21519 5' -66.1 NC_004812.1 + 17043 0.72 0.213844
Target:  5'- cGGCGgggGGcGCCuCGGUCCCGgCCGCCg -3'
miRNA:   3'- cCCGCa--CCaCGG-GCUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 128842 0.72 0.220728
Target:  5'- cGGGC-UGGgccGCCCG-CCCCugcgggccgcgggcgGCCCGCUg -3'
miRNA:   3'- -CCCGcACCa--CGGGCuGGGG---------------CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 122236 0.72 0.223736
Target:  5'- aGGGUGUGGgcgGCgCGgcaaaACCCCGCCgGUg -3'
miRNA:   3'- -CCCGCACCa--CGgGC-----UGGGGCGGgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.