Results 81 - 100 of 686 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 148872 | 0.73 | 0.182141 |
Target: 5'- aGGCG-GGcGCCCccGGCCUCGCCCGgCg -3' miRNA: 3'- cCCGCaCCaCGGG--CUGGGGCGGGCgG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 120220 | 0.73 | 0.19075 |
Target: 5'- cGGC-UGG-GCCCGGCCCagccccuGCCCGUCu -3' miRNA: 3'- cCCGcACCaCGGGCUGGGg------CGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 1488 | 0.73 | 0.195186 |
Target: 5'- cGGGCGgcggcGGaGCgCCGGCcggCCCGCgCCGCCg -3' miRNA: 3'- -CCCGCa----CCaCG-GGCUG---GGGCG-GGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 3635 | 0.73 | 0.199713 |
Target: 5'- cGGCG-GGcGCgCGGCgCCGCCCGCg -3' miRNA: 3'- cCCGCaCCaCGgGCUGgGGCGGGCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 29649 | 0.72 | 0.213844 |
Target: 5'- cGGCGUcgccgccGUGCCCGGCCCUcgcgGCCCcgGCCc -3' miRNA: 3'- cCCGCAc------CACGGGCUGGGG----CGGG--CGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 128842 | 0.72 | 0.220728 |
Target: 5'- cGGGC-UGGgccGCCCG-CCCCugcgggccgcgggcgGCCCGCUg -3' miRNA: 3'- -CCCGcACCa--CGGGCuGGGG---------------CGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 122236 | 0.72 | 0.223736 |
Target: 5'- aGGGUGUGGgcgGCgCGgcaaaACCCCGCCgGUg -3' miRNA: 3'- -CCCGCACCa--CGgGC-----UGGGGCGGgCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 39300 | 0.75 | 0.140708 |
Target: 5'- gGGGCGcggcgGGgGCUCGGCCCCGgCCGUa -3' miRNA: 3'- -CCCGCa----CCaCGGGCUGGGGCgGGCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 38958 | 0.75 | 0.131005 |
Target: 5'- cGGCGcccGGccgGCCCgcGACCCCGCCgCGCCc -3' miRNA: 3'- cCCGCa--CCa--CGGG--CUGGGGCGG-GCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 88423 | 0.76 | 0.12791 |
Target: 5'- cGGGCGUccgGCgCGcCCCCGCCCGCg -3' miRNA: 3'- -CCCGCAccaCGgGCuGGGGCGGGCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 150976 | 0.71 | 0.244684 |
Target: 5'- cGGCGaccccGG-GCCCGGCCCCcGagCCGCCu -3' miRNA: 3'- cCCGCa----CCaCGGGCUGGGG-Cg-GGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 34691 | 0.71 | 0.261445 |
Target: 5'- cGGCGcucagGCCCGACCUCagGCCCGCg -3' miRNA: 3'- cCCGCacca-CGGGCUGGGG--CGGGCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 71433 | 0.71 | 0.267821 |
Target: 5'- uGGGUGUGGaccaugGCCCGcaggcacucggcgaGcgcguccaggcgcgcCCCCGCCCGCg -3' miRNA: 3'- -CCCGCACCa-----CGGGC--------------U---------------GGGGCGGGCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 132772 | 0.71 | 0.273131 |
Target: 5'- aGGGCGgcgccGGgccgGgCCGGCCCCGggucgCCGCCc -3' miRNA: 3'- -CCCGCa----CCa---CgGGCUGGGGCg----GGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 82535 | 0.71 | 0.273131 |
Target: 5'- cGGGCcgaGGcgGCCCG-CgCgCGCCCGCCg -3' miRNA: 3'- -CCCGca-CCa-CGGGCuGgG-GCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 44343 | 0.78 | 0.084699 |
Target: 5'- uGGGCGggcUGGUGgcCCCGcccaccaaccacGCCCCGUCCGCCc -3' miRNA: 3'- -CCCGC---ACCAC--GGGC------------UGGGGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 59282 | 0.78 | 0.093408 |
Target: 5'- aGGGuCGcgGGcGCgCGGCaCCCGCCCGCCg -3' miRNA: 3'- -CCC-GCa-CCaCGgGCUG-GGGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 156501 | 0.77 | 0.105489 |
Target: 5'- cGGGCG-GGcuCCCGGCCCCGCgCGCg -3' miRNA: 3'- -CCCGCaCCacGGGCUGGGGCGgGCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 33854 | 0.76 | 0.113428 |
Target: 5'- cGGGCGcaccGUGCgCGcccucuCCCCGCCCGCCc -3' miRNA: 3'- -CCCGCac--CACGgGCu-----GGGGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 124860 | 0.76 | 0.124883 |
Target: 5'- gGGGCG-GGcGCCgCGcCCCCGCCCcgcGCCu -3' miRNA: 3'- -CCCGCaCCaCGG-GCuGGGGCGGG---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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