miRNA display CGI


Results 21 - 40 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 8431 0.66 0.524585
Target:  5'- -----cGGagGCcgCCGcCCCCGCCCGCCg -3'
miRNA:   3'- cccgcaCCa-CG--GGCuGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 52838 0.66 0.523679
Target:  5'- gGGGCGacGGccacacGCCCGACCgCgGCCCcauagacauccgcGCCc -3'
miRNA:   3'- -CCCGCa-CCa-----CGGGCUGG-GgCGGG-------------CGG- -5'
21519 5' -66.1 NC_004812.1 + 116571 0.66 0.523679
Target:  5'- gGGGCcagugGGUGUauauaaaCCGGCCcgCCGCgggCCGCCg -3'
miRNA:   3'- -CCCGca---CCACG-------GGCUGG--GGCG---GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 41200 0.66 0.523679
Target:  5'- cGGGCGUgaaguugaagGGgaagacgGCCCccgguuGCCCCGaacgaacCCCGCCc -3'
miRNA:   3'- -CCCGCA----------CCa------CGGGc-----UGGGGC-------GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 137050 0.66 0.523679
Target:  5'- cGGgGUGGUGgCCGGCCUgGgcuucgcgauccaCCgCGCCc -3'
miRNA:   3'- cCCgCACCACgGGCUGGGgC-------------GG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 152765 0.66 0.519157
Target:  5'- -cGCGcUGGUGCUCaugcgccugcgcgggGACCuCCGCgUCGCCg -3'
miRNA:   3'- ccCGC-ACCACGGG---------------CUGG-GGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 27257 0.66 0.519157
Target:  5'- -cGCGcUGGUGCUCaugcgccugcgcgggGACCuCCGCgUCGCCg -3'
miRNA:   3'- ccCGC-ACCACGGG---------------CUGG-GGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 76666 0.66 0.519157
Target:  5'- cGGCGaGGUGgccuucuucggcaaaCCCG-CCCCggGCCUGCUg -3'
miRNA:   3'- cCCGCaCCAC---------------GGGCuGGGG--CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 48744 0.66 0.51555
Target:  5'- -cGCGUGGcgGCuCCGcCCUCGgaggcggagcCCCGCCu -3'
miRNA:   3'- ccCGCACCa-CG-GGCuGGGGC----------GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 124591 0.66 0.51555
Target:  5'- -uGCGaUGG-GCCCcggcgaagcGACCCgGgCCGCCg -3'
miRNA:   3'- ccCGC-ACCaCGGG---------CUGGGgCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 126539 0.66 0.51555
Target:  5'- -cGCGaGG-GCCCGgccGCCCgCGCgCGCCc -3'
miRNA:   3'- ccCGCaCCaCGGGC---UGGG-GCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 48165 0.66 0.51555
Target:  5'- cGGGCGgcggccgcGGcGCUggagaacgCGGCCCUGCaggCCGCCg -3'
miRNA:   3'- -CCCGCa-------CCaCGG--------GCUGGGGCG---GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 3961 0.66 0.51555
Target:  5'- -----cGGagGCCCGGCgCCCcCCCGCCg -3'
miRNA:   3'- cccgcaCCa-CGGGCUG-GGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 72977 0.66 0.51555
Target:  5'- aGGGCGgc--GUCgGcGCCCCGCUCGCg -3'
miRNA:   3'- -CCCGCaccaCGGgC-UGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 77740 0.66 0.51555
Target:  5'- aGGGgGUGG-GggCGGCCuCCGCCCuCCc -3'
miRNA:   3'- -CCCgCACCaCggGCUGG-GGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 136297 0.66 0.51555
Target:  5'- uGGGgGcGGUGCCUGcgcgcgcgcuGCgCCgGCgCGCCg -3'
miRNA:   3'- -CCCgCaCCACGGGC----------UG-GGgCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 133687 0.66 0.51555
Target:  5'- uGGGCGUccaggcgcGGggGCgCGGCCaCGCCC-CCg -3'
miRNA:   3'- -CCCGCA--------CCa-CGgGCUGGgGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 48403 0.66 0.51555
Target:  5'- aGGCGcGGUagagcGCCaGGCUCCGCUCGUa -3'
miRNA:   3'- cCCGCaCCA-----CGGgCUGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 34862 0.66 0.51555
Target:  5'- -----cGGagGCCCGGCgCCCcCCCGCCg -3'
miRNA:   3'- cccgcaCCa-CGGGCUG-GGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 155492 0.66 0.51555
Target:  5'- -uGCGaUGG-GCCCcggcgaagcGACCCgGgCCGCCg -3'
miRNA:   3'- ccCGC-ACCaCGGG---------CUGGGgCgGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.