miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 3' -55.7 NC_004812.1 + 123511 0.66 0.928196
Target:  5'- cCGGGGcuccaaGGCCgCGAGagggCUCCAUGg -3'
miRNA:   3'- -GCCCCag----CCGGaGCUUaua-GAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 115543 0.66 0.928196
Target:  5'- aGGGGg-GGCCUCGAGagaCUCCcCu -3'
miRNA:   3'- gCCCCagCCGGAGCUUauaGAGGuGc -5'
21524 3' -55.7 NC_004812.1 + 21614 0.66 0.925036
Target:  5'- cCGGGcgaGUCGGCCcggCGGcgcucggccgagcugGUGUCcgCCACGa -3'
miRNA:   3'- -GCCC---CAGCCGGa--GCU---------------UAUAGa-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 26083 0.66 0.922882
Target:  5'- cCGGGGucgUCGGCCUCGGA---CUCgGa- -3'
miRNA:   3'- -GCCCC---AGCCGGAGCUUauaGAGgUgc -5'
21524 3' -55.7 NC_004812.1 + 129022 0.66 0.922882
Target:  5'- cCGGGGccggCGGCCcCGGGgg-CggggCCGCGg -3'
miRNA:   3'- -GCCCCa---GCCGGaGCUUauaGa---GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 69294 0.66 0.922882
Target:  5'- aCGGGGcUCGcCCUCGGcgAcCUCgACGa -3'
miRNA:   3'- -GCCCC-AGCcGGAGCUuaUaGAGgUGC- -5'
21524 3' -55.7 NC_004812.1 + 3514 0.66 0.922882
Target:  5'- cCGGGGccggCGGCCcCGGGgg-CggggCCGCGg -3'
miRNA:   3'- -GCCCCa---GCCGGaGCUUauaGa---GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 108560 0.66 0.922882
Target:  5'- gGGGGUgaugaaGGCC-CGGGcGUCggCCACGa -3'
miRNA:   3'- gCCCCAg-----CCGGaGCUUaUAGa-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 151592 0.66 0.922882
Target:  5'- cCGGGGucgUCGGCCUCGGA---CUCgGa- -3'
miRNA:   3'- -GCCCC---AGCCGGAGCUUauaGAGgUgc -5'
21524 3' -55.7 NC_004812.1 + 92398 0.66 0.922338
Target:  5'- uGGGGUCGagcaCCUUGGcgcccugGUAUC-CCACGu -3'
miRNA:   3'- gCCCCAGCc---GGAGCU-------UAUAGaGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 105668 0.66 0.917336
Target:  5'- aGGGGacgggCGGCCgCGGAguuccggGUUUUCGCGg -3'
miRNA:   3'- gCCCCa----GCCGGaGCUUa------UAGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 101229 0.66 0.917336
Target:  5'- aGGGGcgccgcgcCGGCCUCGAcgGg--CCGCa -3'
miRNA:   3'- gCCCCa-------GCCGGAGCUuaUagaGGUGc -5'
21524 3' -55.7 NC_004812.1 + 76745 0.66 0.917336
Target:  5'- gCGGccgccguGUCGGCCgUCGggUG-CUCCAgGg -3'
miRNA:   3'- -GCCc------CAGCCGG-AGCuuAUaGAGGUgC- -5'
21524 3' -55.7 NC_004812.1 + 97117 0.66 0.917336
Target:  5'- gGGGGcCGcGCCgccgCGGcgGcgcgccUCUCCGCGg -3'
miRNA:   3'- gCCCCaGC-CGGa---GCUuaU------AGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 17037 0.67 0.911557
Target:  5'- aGGGGUCGgcggggggcGCCUCGGucccggCcgCCGCGg -3'
miRNA:   3'- gCCCCAGC---------CGGAGCUuaua--Ga-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 46658 0.67 0.911557
Target:  5'- uGGGGUCcguGGCCggGGGgcagCUCCGCu -3'
miRNA:   3'- gCCCCAG---CCGGagCUUaua-GAGGUGc -5'
21524 3' -55.7 NC_004812.1 + 91884 0.67 0.909181
Target:  5'- cCGGGGgcgcgcaugcccgCGGCCUCGGGgaagucggcCUCCAgGc -3'
miRNA:   3'- -GCCCCa------------GCCGGAGCUUaua------GAGGUgC- -5'
21524 3' -55.7 NC_004812.1 + 68797 0.67 0.905547
Target:  5'- gCGGGGUCGGUUcgCGGcgGUCaucaaCCGCu -3'
miRNA:   3'- -GCCCCAGCCGGa-GCUuaUAGa----GGUGc -5'
21524 3' -55.7 NC_004812.1 + 13275 0.67 0.901831
Target:  5'- uCGGGGcggcggaGGCCUCGGcgcggcggggcguccGcGUCUCCGCc -3'
miRNA:   3'- -GCCCCag-----CCGGAGCU---------------UaUAGAGGUGc -5'
21524 3' -55.7 NC_004812.1 + 22564 0.67 0.899309
Target:  5'- uCGaGGUCGGCCUCGG---UUUCCGg- -3'
miRNA:   3'- -GCcCCAGCCGGAGCUuauAGAGGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.