miRNA display CGI


Results 21 - 40 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 5' -59.2 NC_004812.1 + 3370 0.66 0.775425
Target:  5'- cGCGCGGggcGCAGUagGCcucgAGGGC-GGCGg -3'
miRNA:   3'- aCGUGCC---UGUCGagCG----UCUCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 110956 0.66 0.775425
Target:  5'- aGCACGGGCugucguGCcUGCGGuucaAGCacGGGCGg -3'
miRNA:   3'- aCGUGCCUGu-----CGaGCGUC----UCG--UCCGC- -5'
21524 5' -59.2 NC_004812.1 + 127904 0.66 0.775425
Target:  5'- gGCGCgGGGCGGCggUCGCgaaauccaggaAGGGCAcGCGa -3'
miRNA:   3'- aCGUG-CCUGUCG--AGCG-----------UCUCGUcCGC- -5'
21524 5' -59.2 NC_004812.1 + 98766 0.66 0.775425
Target:  5'- aGCGCGG-CGGCg-GC-GAGUGGGCc -3'
miRNA:   3'- aCGUGCCuGUCGagCGuCUCGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 83934 0.66 0.775425
Target:  5'- gGCGCGGACGuuCUCGCcGGGCucgccGCGg -3'
miRNA:   3'- aCGUGCCUGUc-GAGCGuCUCGuc---CGC- -5'
21524 5' -59.2 NC_004812.1 + 100911 0.66 0.775425
Target:  5'- gGCGCGGAgaCGGC-CGCGaGGaCGGGCc -3'
miRNA:   3'- aCGUGCCU--GUCGaGCGUcUC-GUCCGc -5'
21524 5' -59.2 NC_004812.1 + 97360 0.66 0.774504
Target:  5'- cGCACcGccgccaaGCAGCUCGCcgcGGucGCGGGCGu -3'
miRNA:   3'- aCGUGcC-------UGUCGAGCG---UCu-CGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 26678 0.66 0.76988
Target:  5'- aUGCGCuGGAgGGCggggcugCGUAGGcggcgacggauccacGCAGGCGc -3'
miRNA:   3'- -ACGUG-CCUgUCGa------GCGUCU---------------CGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 109100 0.66 0.76988
Target:  5'- cGUGCGGACGGUggcggcgacgucccCGguGAucuucugaggcaGCAGGCGg -3'
miRNA:   3'- aCGUGCCUGUCGa-------------GCguCU------------CGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 101676 0.66 0.76616
Target:  5'- aGCGCcaGGGCGucuuCUCGC--GGCAGGCGg -3'
miRNA:   3'- aCGUG--CCUGUc---GAGCGucUCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 108417 0.66 0.76616
Target:  5'- gGCACGucGGCGGCcUGCAGGGCc-GCGu -3'
miRNA:   3'- aCGUGC--CUGUCGaGCGUCUCGucCGC- -5'
21524 5' -59.2 NC_004812.1 + 66465 0.66 0.76616
Target:  5'- gGCACGGAgAGCgagCGCAcgacGGCgaucuccucggaGGGCGu -3'
miRNA:   3'- aCGUGCCUgUCGa--GCGUc---UCG------------UCCGC- -5'
21524 5' -59.2 NC_004812.1 + 18543 0.66 0.76616
Target:  5'- cGCGCucGCGGCcagCGCGGcGCGGGCc -3'
miRNA:   3'- aCGUGccUGUCGa--GCGUCuCGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 139093 0.66 0.76616
Target:  5'- uUGCACGGGgAGCcgaaagaCGCggcuGGGGCcGGCGc -3'
miRNA:   3'- -ACGUGCCUgUCGa------GCG----UCUCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 88215 0.66 0.76616
Target:  5'- cGCGgcccCGGACGGCg-GCuGGGC-GGCGg -3'
miRNA:   3'- aCGU----GCCUGUCGagCGuCUCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 111258 0.66 0.76616
Target:  5'- -aCGCGGuGCGGCcCGUGGGcGCGGGCa -3'
miRNA:   3'- acGUGCC-UGUCGaGCGUCU-CGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 47514 0.66 0.76616
Target:  5'- gGCGCGGAgguggcCGGCcagGCGGGGgGGGCu -3'
miRNA:   3'- aCGUGCCU------GUCGag-CGUCUCgUCCGc -5'
21524 5' -59.2 NC_004812.1 + 59672 0.66 0.76616
Target:  5'- gGCGCGGGCGccgcguugccGCgcgCGCgagggAGAGC-GGCGg -3'
miRNA:   3'- aCGUGCCUGU----------CGa--GCG-----UCUCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 128592 0.66 0.76616
Target:  5'- cGCGuCGGuccaGGCggGCGGGGCGGGgGa -3'
miRNA:   3'- aCGU-GCCug--UCGagCGUCUCGUCCgC- -5'
21524 5' -59.2 NC_004812.1 + 148890 0.66 0.76616
Target:  5'- gGCGCGGAuccCGGCggGC-GAGCGuccGGCGa -3'
miRNA:   3'- aCGUGCCU---GUCGagCGuCUCGU---CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.