miRNA display CGI


Results 1 - 20 of 759 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21525 3' -65.7 NC_004812.1 + 3629 0.66 0.550241
Target:  5'- -gCG-CgCCGGCGGGcGCgCGGCgcCGCCc -3'
miRNA:   3'- agGCuGgGGCCGCCC-CG-GCUGa-GCGG- -5'
21525 3' -65.7 NC_004812.1 + 16453 0.66 0.550241
Target:  5'- aUCUuuuACUCCaGCGGGGCCa--UCGCCc -3'
miRNA:   3'- -AGGc--UGGGGcCGCCCCGGcugAGCGG- -5'
21525 3' -65.7 NC_004812.1 + 119409 0.66 0.550241
Target:  5'- -gCGugCCCGG-GGGcGCCG-CUCccccugGCCg -3'
miRNA:   3'- agGCugGGGCCgCCC-CGGCuGAG------CGG- -5'
21525 3' -65.7 NC_004812.1 + 150310 0.66 0.550241
Target:  5'- -gCGugCCCGG-GGGcGCCG-CUCccccugGCCg -3'
miRNA:   3'- agGCugGGGCCgCCC-CGGCuGAG------CGG- -5'
21525 3' -65.7 NC_004812.1 + 148883 0.66 0.550241
Target:  5'- cCCGGCcucgCCCGGCGcGGagacccccgccGCgGACUCGgCg -3'
miRNA:   3'- aGGCUG----GGGCCGC-CC-----------CGgCUGAGCgG- -5'
21525 3' -65.7 NC_004812.1 + 29929 0.66 0.550241
Target:  5'- -aCGGCgaCGGCgcgagggagcggGGGGCCGgGCUCGCg -3'
miRNA:   3'- agGCUGggGCCG------------CCCCGGC-UGAGCGg -5'
21525 3' -65.7 NC_004812.1 + 41330 0.66 0.550241
Target:  5'- gUCCGGCCgCgGGauGGaGCUGGCcuaCGCCu -3'
miRNA:   3'- -AGGCUGG-GgCCgcCC-CGGCUGa--GCGG- -5'
21525 3' -65.7 NC_004812.1 + 11742 0.66 0.550241
Target:  5'- gUCaCGAUCCCGGCcguGGGGCuCcGCaCGCUc -3'
miRNA:   3'- -AG-GCUGGGGCCG---CCCCG-GcUGaGCGG- -5'
21525 3' -65.7 NC_004812.1 + 126037 0.66 0.550241
Target:  5'- cUCCcGCCCCGGgagcCGGaaGGCggCGACgCGCCg -3'
miRNA:   3'- -AGGcUGGGGCC----GCC--CCG--GCUGaGCGG- -5'
21525 3' -65.7 NC_004812.1 + 145342 0.66 0.550241
Target:  5'- -gCGugCUCGGggcggccgUGGGGCUGGCcgUUGCCg -3'
miRNA:   3'- agGCugGGGCC--------GCCCCGGCUG--AGCGG- -5'
21525 3' -65.7 NC_004812.1 + 141260 0.66 0.550241
Target:  5'- -gUGaACCCCGgucgcuuccGCGGGGCCcACcuggCGCCg -3'
miRNA:   3'- agGC-UGGGGC---------CGCCCCGGcUGa---GCGG- -5'
21525 3' -65.7 NC_004812.1 + 94483 0.66 0.550241
Target:  5'- gCCGA-UCCGGCcuccGGGCCGcCgCGCCc -3'
miRNA:   3'- aGGCUgGGGCCGc---CCCGGCuGaGCGG- -5'
21525 3' -65.7 NC_004812.1 + 129137 0.66 0.550241
Target:  5'- -gCG-CgCCGGCGGGcGCgCGGCgcCGCCc -3'
miRNA:   3'- agGCuGgGGCCGCCC-CG-GCUGa-GCGG- -5'
21525 3' -65.7 NC_004812.1 + 82199 0.66 0.550241
Target:  5'- aCCGuCuCCCGGaGcGGGCUGGCccggcccgCGCCg -3'
miRNA:   3'- aGGCuG-GGGCCgC-CCCGGCUGa-------GCGG- -5'
21525 3' -65.7 NC_004812.1 + 10716 0.66 0.550241
Target:  5'- aCgGGCUCCagggggaggggcGGCGGGGCggcaacggcggCGACgCGCCu -3'
miRNA:   3'- aGgCUGGGG------------CCGCCCCG-----------GCUGaGCGG- -5'
21525 3' -65.7 NC_004812.1 + 48995 0.66 0.550241
Target:  5'- gCCGcagacgugaACCCCGGCGgccGGGCCcacgcgGACgaggucaaccgCGCCg -3'
miRNA:   3'- aGGC---------UGGGGCCGC---CCCGG------CUGa----------GCGG- -5'
21525 3' -65.7 NC_004812.1 + 6198 0.66 0.550241
Target:  5'- cCCGggGCgCCCGGCGGcccGCgGACgcCGCCc -3'
miRNA:   3'- aGGC--UG-GGGCCGCCc--CGgCUGa-GCGG- -5'
21525 3' -65.7 NC_004812.1 + 68454 0.66 0.550241
Target:  5'- --gGGCuCCCGGUGGuGGCCGcgGCgCGCa -3'
miRNA:   3'- aggCUG-GGGCCGCC-CCGGC--UGaGCGg -5'
21525 3' -65.7 NC_004812.1 + 529 0.66 0.550241
Target:  5'- cUCCcGCCCCGGgagcCGGaaGGCggCGACgCGCCg -3'
miRNA:   3'- -AGGcUGGGGCC----GCC--CCG--GCUGaGCGG- -5'
21525 3' -65.7 NC_004812.1 + 117982 0.66 0.550241
Target:  5'- cCCGGCcucgCCCGGCGcGGagacccccgccGCgGACUCGgCg -3'
miRNA:   3'- aGGCUG----GGGCCGC-CC-----------CGgCUGAGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.