miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21525 5' -51.1 NC_004812.1 + 30055 0.66 0.994767
Target:  5'- aGggGcACGCCUCgGCGAcGgcGGcgGa -3'
miRNA:   3'- -CuuCaUGCGGAGgCGCU-CauUCuaCc -5'
21525 5' -51.1 NC_004812.1 + 47095 0.66 0.994767
Target:  5'- gGGAGUuuaACGCCa-CGCGGGUGuGcgGGa -3'
miRNA:   3'- -CUUCA---UGCGGagGCGCUCAUuCuaCC- -5'
21525 5' -51.1 NC_004812.1 + 12620 0.66 0.994767
Target:  5'- cGAAG-ACGCCgCCGCGAGc--GGUcGGc -3'
miRNA:   3'- -CUUCaUGCGGaGGCGCUCauuCUA-CC- -5'
21525 5' -51.1 NC_004812.1 + 65057 0.66 0.994767
Target:  5'- ---aUGCGCCgCCGCGGGUAcucGgcGGa -3'
miRNA:   3'- cuucAUGCGGaGGCGCUCAUu--CuaCC- -5'
21525 5' -51.1 NC_004812.1 + 78953 0.66 0.993932
Target:  5'- gGggGUGCGCCgggggUCGgGGGUGcGccGGg -3'
miRNA:   3'- -CuuCAUGCGGa----GGCgCUCAUuCuaCC- -5'
21525 5' -51.1 NC_004812.1 + 78989 0.66 0.993932
Target:  5'- gGggGUGCGCCgggggUCGgGGGUGcgccgGGGguUGGg -3'
miRNA:   3'- -CuuCAUGCGGa----GGCgCUCAU-----UCU--ACC- -5'
21525 5' -51.1 NC_004812.1 + 30589 0.66 0.992994
Target:  5'- aGAAGaGCGCCcgCCGgGGGUcGGgcGGc -3'
miRNA:   3'- -CUUCaUGCGGa-GGCgCUCAuUCuaCC- -5'
21525 5' -51.1 NC_004812.1 + 58942 0.66 0.991944
Target:  5'- cGggGgcCGCCUggccugCCGUGAGgcugggggccGAGAUGGc -3'
miRNA:   3'- -CuuCauGCGGA------GGCGCUCa---------UUCUACC- -5'
21525 5' -51.1 NC_004812.1 + 73766 0.66 0.991606
Target:  5'- cGggG-GCGCCgggugcccgcgggcUCCGCGAGcGGGgcGGg -3'
miRNA:   3'- -CuuCaUGCGG--------------AGGCGCUCaUUCuaCC- -5'
21525 5' -51.1 NC_004812.1 + 124711 0.66 0.990773
Target:  5'- uGGAGUG-GCUcgaCCGCGGGUGGGA-GGc -3'
miRNA:   3'- -CUUCAUgCGGa--GGCGCUCAUUCUaCC- -5'
21525 5' -51.1 NC_004812.1 + 78490 0.66 0.990773
Target:  5'- cGAGGcgcgacACGCCUCCGUccGUGuccGGGUGGc -3'
miRNA:   3'- -CUUCa-----UGCGGAGGCGcuCAU---UCUACC- -5'
21525 5' -51.1 NC_004812.1 + 101997 0.66 0.990649
Target:  5'- gGggGUcgcgcgacucgcgGCGCCgCCGCGAG---GGUGGc -3'
miRNA:   3'- -CuuCA-------------UGCGGaGGCGCUCauuCUACC- -5'
21525 5' -51.1 NC_004812.1 + 103224 0.67 0.989471
Target:  5'- --cGUGCGggagcuCCUCCGCGAGcAGGAgcGGc -3'
miRNA:   3'- cuuCAUGC------GGAGGCGCUCaUUCUa-CC- -5'
21525 5' -51.1 NC_004812.1 + 23582 0.67 0.988031
Target:  5'- gGAGGggcgGCGCg-CCGCGGGgcGGGgguUGGg -3'
miRNA:   3'- -CUUCa---UGCGgaGGCGCUCauUCU---ACC- -5'
21525 5' -51.1 NC_004812.1 + 149090 0.67 0.988031
Target:  5'- gGAGGggcgGCGCg-CCGCGGGgcGGGgguUGGg -3'
miRNA:   3'- -CUUCa---UGCGgaGGCGCUCauUCU---ACC- -5'
21525 5' -51.1 NC_004812.1 + 48769 0.67 0.986443
Target:  5'- cGGAGcccCGCCUCCGCGAGg------- -3'
miRNA:   3'- -CUUCau-GCGGAGGCGCUCauucuacc -5'
21525 5' -51.1 NC_004812.1 + 16518 0.67 0.986443
Target:  5'- cGggGgcgAUGCgCUCaCGCGuGgGAGGUGGg -3'
miRNA:   3'- -CuuCa--UGCG-GAG-GCGCuCaUUCUACC- -5'
21525 5' -51.1 NC_004812.1 + 21012 0.67 0.986443
Target:  5'- ----cGCGCCUcggCCGCGGGggugcaUGGGGUGGc -3'
miRNA:   3'- cuucaUGCGGA---GGCGCUC------AUUCUACC- -5'
21525 5' -51.1 NC_004812.1 + 66118 0.67 0.986443
Target:  5'- gGggGUcgcagGCGCCgccgCCGCGc--AGGAUGGu -3'
miRNA:   3'- -CuuCA-----UGCGGa---GGCGCucaUUCUACC- -5'
21525 5' -51.1 NC_004812.1 + 142791 0.67 0.984698
Target:  5'- gGGAGUACGCCcggcugCCGCGG---AGcUGGg -3'
miRNA:   3'- -CUUCAUGCGGa-----GGCGCUcauUCuACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.