miRNA display CGI


Results 1 - 20 of 859 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21526 3' -57.9 NC_004812.1 + 47672 0.66 0.890253
Target:  5'- gCCGcuCCACGuagagggggaaacccGCGGCCGCGGgcccccgGGCGuACu -3'
miRNA:   3'- -GGU--GGUGC---------------UGCCGGUGCUa------CCGC-UGc -5'
21526 3' -57.9 NC_004812.1 + 24766 0.66 0.890253
Target:  5'- -gACCGCGGCgucgaugcgcaccggGGUgAUGAUcagGGCGACGg -3'
miRNA:   3'- ggUGGUGCUG---------------CCGgUGCUA---CCGCUGC- -5'
21526 3' -57.9 NC_004812.1 + 153982 0.66 0.887628
Target:  5'- gCCGCCGCcGC-GCCugGGccGCGGCGc -3'
miRNA:   3'- -GGUGGUGcUGcCGGugCUacCGCUGC- -5'
21526 3' -57.9 NC_004812.1 + 30069 0.66 0.887628
Target:  5'- gCGCgCGCgGGCGGCCgggcccucGCGggGGCG-CGg -3'
miRNA:   3'- gGUG-GUG-CUGCCGG--------UGCuaCCGCuGC- -5'
21526 3' -57.9 NC_004812.1 + 43616 0.66 0.887628
Target:  5'- aCGCCGCGG-GG-CAgGggGGCGugGg -3'
miRNA:   3'- gGUGGUGCUgCCgGUgCuaCCGCugC- -5'
21526 3' -57.9 NC_004812.1 + 82709 0.66 0.887628
Target:  5'- cCgGCCgACGGCGGCUcgccCGAgcccagcagGGCGGCa -3'
miRNA:   3'- -GgUGG-UGCUGCCGGu---GCUa--------CCGCUGc -5'
21526 3' -57.9 NC_004812.1 + 155221 0.66 0.887628
Target:  5'- -gGCCGCGAagagcgGGCCuuGGUGcGCGAgGg -3'
miRNA:   3'- ggUGGUGCUg-----CCGGugCUAC-CGCUgC- -5'
21526 3' -57.9 NC_004812.1 + 81192 0.66 0.887628
Target:  5'- cCCGCCA--GCaGCCugGAcgcgcgGGCGugGa -3'
miRNA:   3'- -GGUGGUgcUGcCGGugCUa-----CCGCugC- -5'
21526 3' -57.9 NC_004812.1 + 27039 0.66 0.887628
Target:  5'- gUACC-CGugGcCCACGAgGGUGugGa -3'
miRNA:   3'- gGUGGuGCugCcGGUGCUaCCGCugC- -5'
21526 3' -57.9 NC_004812.1 + 30788 0.66 0.887628
Target:  5'- cCCGCCuGCGG-GGCCGCGGgccgagGGCcccACGg -3'
miRNA:   3'- -GGUGG-UGCUgCCGGUGCUa-----CCGc--UGC- -5'
21526 3' -57.9 NC_004812.1 + 25339 0.66 0.887628
Target:  5'- gCCACCAgcCGGCGGUg-----GGCGGCGa -3'
miRNA:   3'- -GGUGGU--GCUGCCGgugcuaCCGCUGC- -5'
21526 3' -57.9 NC_004812.1 + 75911 0.66 0.887628
Target:  5'- uUCGCCGCGAgGGCCugcucGGCG-CGc -3'
miRNA:   3'- -GGUGGUGCUgCCGGugcuaCCGCuGC- -5'
21526 3' -57.9 NC_004812.1 + 12048 0.66 0.887628
Target:  5'- aCGCCgACGAC-GUCGCGGUGcCGugGa -3'
miRNA:   3'- gGUGG-UGCUGcCGGUGCUACcGCugC- -5'
21526 3' -57.9 NC_004812.1 + 78198 0.66 0.887628
Target:  5'- gCCGCCACGuCGGCgAgGGucaUGcGCGuCGa -3'
miRNA:   3'- -GGUGGUGCuGCCGgUgCU---AC-CGCuGC- -5'
21526 3' -57.9 NC_004812.1 + 155578 0.66 0.887628
Target:  5'- gCGCgCGCgGGCGGCCgggcccucGCGggGGCG-CGg -3'
miRNA:   3'- gGUG-GUG-CUGCCGG--------UGCuaCCGCuGC- -5'
21526 3' -57.9 NC_004812.1 + 49139 0.66 0.887628
Target:  5'- gCCAUCGCcgaGCGGgcCCugGGgaucGGCGGCGa -3'
miRNA:   3'- -GGUGGUGc--UGCC--GGugCUa---CCGCUGC- -5'
21526 3' -57.9 NC_004812.1 + 29713 0.66 0.887628
Target:  5'- -gGCCGCGAagagcgGGCCuuGGUGcGCGAgGg -3'
miRNA:   3'- ggUGGUGCUg-----CCGGugCUAC-CGCUgC- -5'
21526 3' -57.9 NC_004812.1 + 38463 0.66 0.887628
Target:  5'- aCCGCCGCgucGACGuuCAUGAgcgaggGGUGACa -3'
miRNA:   3'- -GGUGGUG---CUGCcgGUGCUa-----CCGCUGc -5'
21526 3' -57.9 NC_004812.1 + 155685 0.66 0.887628
Target:  5'- gCGCCgGCGGgcuCGGCgcgCGCGAgGGCGugGg -3'
miRNA:   3'- gGUGG-UGCU---GCCG---GUGCUaCCGCugC- -5'
21526 3' -57.9 NC_004812.1 + 48366 0.66 0.887628
Target:  5'- uCCGCCGCgGACGccGCCGCcg-GGCccGGCGa -3'
miRNA:   3'- -GGUGGUG-CUGC--CGGUGcuaCCG--CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.