miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21526 5' -56.7 NC_004812.1 + 4734 0.66 0.888242
Target:  5'- uGC-CCGCUcgCCCGGG-AGGA-GAc -3'
miRNA:   3'- gCGuGGCGAuaGGGCCUgUCCUaCUa -5'
21526 5' -56.7 NC_004812.1 + 35635 0.66 0.888242
Target:  5'- uGC-CCGCUcgCCCGGG-AGGA-GAc -3'
miRNA:   3'- gCGuGGCGAuaGGGCCUgUCCUaCUa -5'
21526 5' -56.7 NC_004812.1 + 100836 0.66 0.888242
Target:  5'- gGCGCCGCgacgCCGGGgAGGgcGAg -3'
miRNA:   3'- gCGUGGCGauagGGCCUgUCCuaCUa -5'
21526 5' -56.7 NC_004812.1 + 63032 0.66 0.881324
Target:  5'- aGCGCgCGCUuggccCCCGGGgAGGcgGGg -3'
miRNA:   3'- gCGUG-GCGAua---GGGCCUgUCCuaCUa -5'
21526 5' -56.7 NC_004812.1 + 12046 0.66 0.881324
Target:  5'- gCGCGCCGCcGUCgCGuuGGgGGGGUGGa -3'
miRNA:   3'- -GCGUGGCGaUAGgGC--CUgUCCUACUa -5'
21526 5' -56.7 NC_004812.1 + 44841 0.66 0.874184
Target:  5'- -cCACCGCcGUCCCGauGGCGGGccgGUGGUa -3'
miRNA:   3'- gcGUGGCGaUAGGGC--CUGUCC---UACUA- -5'
21526 5' -56.7 NC_004812.1 + 37219 0.66 0.874184
Target:  5'- gGCACgCGggGggcCCCGGGCAGGAgGGg -3'
miRNA:   3'- gCGUG-GCgaUa--GGGCCUGUCCUaCUa -5'
21526 5' -56.7 NC_004812.1 + 69486 0.66 0.874184
Target:  5'- gCGCGCCGCcgccgaaCCCagagGGACGGGGUcGAg -3'
miRNA:   3'- -GCGUGGCGaua----GGG----CCUGUCCUA-CUa -5'
21526 5' -56.7 NC_004812.1 + 6318 0.66 0.874184
Target:  5'- gGCACgCGggGggcCCCGGGCAGGAgGGg -3'
miRNA:   3'- gCGUG-GCgaUa--GGGCCUGUCCUaCUa -5'
21526 5' -56.7 NC_004812.1 + 95296 0.66 0.874184
Target:  5'- aCGCACCGCaucGUCCCGcGGaGGGAa--- -3'
miRNA:   3'- -GCGUGGCGa--UAGGGC-CUgUCCUacua -5'
21526 5' -56.7 NC_004812.1 + 75641 0.66 0.859263
Target:  5'- gCGCGCCGCggcgGUCCgagagguguuggCGGACGuGGAcGAg -3'
miRNA:   3'- -GCGUGGCGa---UAGG------------GCCUGU-CCUaCUa -5'
21526 5' -56.7 NC_004812.1 + 136176 0.66 0.859263
Target:  5'- gGCGuCCGCggacGUCCgGGGCAGGGc--- -3'
miRNA:   3'- gCGU-GGCGa---UAGGgCCUGUCCUacua -5'
21526 5' -56.7 NC_004812.1 + 15421 0.66 0.859263
Target:  5'- gCGCGCCGC---CCCGGGCcuccGGGAgcUGGc -3'
miRNA:   3'- -GCGUGGCGauaGGGCCUG----UCCU--ACUa -5'
21526 5' -56.7 NC_004812.1 + 13645 0.66 0.859263
Target:  5'- --aGCCGCguccaCCCGGGCAGGuUGGc -3'
miRNA:   3'- gcgUGGCGaua--GGGCCUGUCCuACUa -5'
21526 5' -56.7 NC_004812.1 + 24487 0.67 0.851492
Target:  5'- gGCgGCCGC--UCCUGGACGGGGg--- -3'
miRNA:   3'- gCG-UGGCGauAGGGCCUGUCCUacua -5'
21526 5' -56.7 NC_004812.1 + 37819 0.67 0.851492
Target:  5'- gCGCGCUGCg--CCCgcgGGGcCGGGGUGGg -3'
miRNA:   3'- -GCGUGGCGauaGGG---CCU-GUCCUACUa -5'
21526 5' -56.7 NC_004812.1 + 6918 0.67 0.851492
Target:  5'- gCGCGCUGCg--CCCgcgGGGcCGGGGUGGg -3'
miRNA:   3'- -GCGUGGCGauaGGG---CCU-GUCCUACUa -5'
21526 5' -56.7 NC_004812.1 + 156053 0.67 0.843523
Target:  5'- aCGCgGCCGCgcgcgCCgGGGCGGGAggcggGAg -3'
miRNA:   3'- -GCG-UGGCGaua--GGgCCUGUCCUa----CUa -5'
21526 5' -56.7 NC_004812.1 + 125152 0.67 0.843523
Target:  5'- aCGCgGCCGCgcgcgCCgGGGCGGGAggcggGAg -3'
miRNA:   3'- -GCG-UGGCGaua--GGgCCUGUCCUa----CUa -5'
21526 5' -56.7 NC_004812.1 + 37711 0.67 0.835362
Target:  5'- gCGCGCCGggcGUCUgGGGCuGGGUGGg -3'
miRNA:   3'- -GCGUGGCga-UAGGgCCUGuCCUACUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.