miRNA display CGI


Results 1 - 20 of 911 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21527 3' -63.3 NC_004812.1 + 133070 0.66 0.64581
Target:  5'- --gCGCGGGGggcggucCCGCcccCACCGcCGGCa -3'
miRNA:   3'- aggGCGUCCCa------GGCGcu-GUGGC-GCCG- -5'
21527 3' -63.3 NC_004812.1 + 115356 0.66 0.64581
Target:  5'- --gCGCGGGcGgggaCGCGGCGCCgacagacgaagGCGGCg -3'
miRNA:   3'- aggGCGUCC-Cag--GCGCUGUGG-----------CGCCG- -5'
21527 3' -63.3 NC_004812.1 + 127233 0.66 0.64581
Target:  5'- cUCCGCccGGccCCGCGcGCcuCCGCGGCc -3'
miRNA:   3'- aGGGCGucCCa-GGCGC-UGu-GGCGCCG- -5'
21527 3' -63.3 NC_004812.1 + 111728 0.66 0.64581
Target:  5'- gCUCGCGuucGGGU--GCGACGCCGCGcucguGCg -3'
miRNA:   3'- aGGGCGU---CCCAggCGCUGUGGCGC-----CG- -5'
21527 3' -63.3 NC_004812.1 + 1058 0.66 0.64581
Target:  5'- cUCCUGCccGG-CCGCGGuCuccuccugcccgGCCGCGGUc -3'
miRNA:   3'- -AGGGCGucCCaGGCGCU-G------------UGGCGCCG- -5'
21527 3' -63.3 NC_004812.1 + 24854 0.66 0.64581
Target:  5'- -gCCGCGGGcGg-CGCGGCugCGgGGg -3'
miRNA:   3'- agGGCGUCC-CagGCGCUGugGCgCCg -5'
21527 3' -63.3 NC_004812.1 + 47054 0.66 0.64581
Target:  5'- gCgUGCGGGcGUCCuGCGucaGCGCCGCGa- -3'
miRNA:   3'- aGgGCGUCC-CAGG-CGC---UGUGGCGCcg -5'
21527 3' -63.3 NC_004812.1 + 53098 0.66 0.64581
Target:  5'- aCCUGCAGGaGaugcUCCGCGcgGCCGUcGCg -3'
miRNA:   3'- aGGGCGUCC-C----AGGCGCugUGGCGcCG- -5'
21527 3' -63.3 NC_004812.1 + 31432 0.66 0.64581
Target:  5'- gCCCGCGcgcccGGGcccucCCGCcucccgccccGGCGCgCGCGGCc -3'
miRNA:   3'- aGGGCGU-----CCCa----GGCG----------CUGUG-GCGCCG- -5'
21527 3' -63.3 NC_004812.1 + 101988 0.66 0.64581
Target:  5'- gCCCGCGGGccucUCCGgccccgccCGuCcCCGCGGCc -3'
miRNA:   3'- aGGGCGUCCc---AGGC--------GCuGuGGCGCCG- -5'
21527 3' -63.3 NC_004812.1 + 87118 0.66 0.64581
Target:  5'- cCCCGUcccucuGGGUUCgGCGGCGgCGCgccagGGCg -3'
miRNA:   3'- aGGGCGu-----CCCAGG-CGCUGUgGCG-----CCG- -5'
21527 3' -63.3 NC_004812.1 + 98722 0.66 0.64581
Target:  5'- --gCGCGGGGUCguucuCGCGcgggggcaGCGCCcccgGCGGCg -3'
miRNA:   3'- aggGCGUCCCAG-----GCGC--------UGUGG----CGCCG- -5'
21527 3' -63.3 NC_004812.1 + 36586 0.66 0.64581
Target:  5'- -gCCGCGGGG-CUGCGugAgCGUGa- -3'
miRNA:   3'- agGGCGUCCCaGGCGCugUgGCGCcg -5'
21527 3' -63.3 NC_004812.1 + 85254 0.66 0.64581
Target:  5'- --aCGCAGGacgagcuggCCaGCGuCACCGCGGUg -3'
miRNA:   3'- aggGCGUCCca-------GG-CGCuGUGGCGCCG- -5'
21527 3' -63.3 NC_004812.1 + 144946 0.66 0.64581
Target:  5'- cCCCGgGGGGagaggCCGaGGCGCCGCu-- -3'
miRNA:   3'- aGGGCgUCCCa----GGCgCUGUGGCGccg -5'
21527 3' -63.3 NC_004812.1 + 31959 0.66 0.64581
Target:  5'- cUCCUGCccGG-CCGCGGuCuccuccugcccgGCCGCGGUc -3'
miRNA:   3'- -AGGGCGucCCaGGCGCU-G------------UGGCGCCG- -5'
21527 3' -63.3 NC_004812.1 + 145510 0.66 0.64581
Target:  5'- aUCUGCAGGcUCUuguggcuggGCGGC-UCGCGGCg -3'
miRNA:   3'- aGGGCGUCCcAGG---------CGCUGuGGCGCCG- -5'
21527 3' -63.3 NC_004812.1 + 7562 0.66 0.64581
Target:  5'- --gCGCGGGGggcggucCCGCcccCACCGcCGGCa -3'
miRNA:   3'- aggGCGUCCCa------GGCGcu-GUGGC-GCCG- -5'
21527 3' -63.3 NC_004812.1 + 531 0.66 0.64581
Target:  5'- gCCCGCGcgcccGGGcccucCCGCcucccgccccGGCGCgCGCGGCc -3'
miRNA:   3'- aGGGCGU-----CCCa----GGCG----------CUGUG-GCGCCG- -5'
21527 3' -63.3 NC_004812.1 + 51432 0.66 0.64581
Target:  5'- gCUCGCAGGca-CGCGGcCGCuCGCaGGCg -3'
miRNA:   3'- aGGGCGUCCcagGCGCU-GUG-GCG-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.