miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21527 5' -54.9 NC_004812.1 + 92326 0.66 0.946343
Target:  5'- gGGcCugGAugAUGcUGgGGUAgAGGCUGg -3'
miRNA:   3'- aCCaGugCU--UGC-ACgCCAUgUCCGAC- -5'
21527 5' -54.9 NC_004812.1 + 80261 0.66 0.946343
Target:  5'- cGGcCGCGGaccugGCGgugGCGGUGC-GGCg- -3'
miRNA:   3'- aCCaGUGCU-----UGCa--CGCCAUGuCCGac -5'
21527 5' -54.9 NC_004812.1 + 115252 0.66 0.946343
Target:  5'- -cGUCcCGGugGUGCguGGUugAGGCg- -3'
miRNA:   3'- acCAGuGCUugCACG--CCAugUCCGac -5'
21527 5' -54.9 NC_004812.1 + 84353 0.66 0.946343
Target:  5'- cGGaaGCGGG-GUGCGGUgGCGGGCc- -3'
miRNA:   3'- aCCagUGCUUgCACGCCA-UGUCCGac -5'
21527 5' -54.9 NC_004812.1 + 21001 0.66 0.946343
Target:  5'- aGGUgCACGAagcGCGUGCGccccaccgggccGUugAGGCc- -3'
miRNA:   3'- aCCA-GUGCU---UGCACGC------------CAugUCCGac -5'
21527 5' -54.9 NC_004812.1 + 99692 0.66 0.946343
Target:  5'- aGGUcCGCGc-CGUGCGGcgGCgccugcgcccaGGGCUGg -3'
miRNA:   3'- aCCA-GUGCuuGCACGCCa-UG-----------UCCGAC- -5'
21527 5' -54.9 NC_004812.1 + 103748 0.66 0.941831
Target:  5'- gUGGgCGCGGAUGUcuauggggccGCGGU-CGGGCg- -3'
miRNA:   3'- -ACCaGUGCUUGCA----------CGCCAuGUCCGac -5'
21527 5' -54.9 NC_004812.1 + 17954 0.66 0.941831
Target:  5'- gGGUCGCccGGGCGacgGCGGccguCAGGCg- -3'
miRNA:   3'- aCCAGUG--CUUGCa--CGCCau--GUCCGac -5'
21527 5' -54.9 NC_004812.1 + 135788 0.66 0.941831
Target:  5'- cGGUCACGcggaugguGACGagGCGGgcgccgacGCGGGCg- -3'
miRNA:   3'- aCCAGUGC--------UUGCa-CGCCa-------UGUCCGac -5'
21527 5' -54.9 NC_004812.1 + 105459 0.66 0.940431
Target:  5'- gGGUCGCGGagcgaggacggggaGCGgagGaCGGaGCAGGCg- -3'
miRNA:   3'- aCCAGUGCU--------------UGCa--C-GCCaUGUCCGac -5'
21527 5' -54.9 NC_004812.1 + 39530 0.66 0.93708
Target:  5'- aUGGaCGCGAGgG-GCGGgggaGCGGGCg- -3'
miRNA:   3'- -ACCaGUGCUUgCaCGCCa---UGUCCGac -5'
21527 5' -54.9 NC_004812.1 + 2572 0.66 0.93708
Target:  5'- aGGggCACGGGCGUGuCGGgcCcgAGGCg- -3'
miRNA:   3'- aCCa-GUGCUUGCAC-GCCauG--UCCGac -5'
21527 5' -54.9 NC_004812.1 + 8629 0.66 0.93708
Target:  5'- aUGGaCGCGAGgG-GCGGgggaGCGGGCg- -3'
miRNA:   3'- -ACCaGUGCUUgCaCGCCa---UGUCCGac -5'
21527 5' -54.9 NC_004812.1 + 128080 0.66 0.93708
Target:  5'- aGGggCACGGGCGUGuCGGgcCcgAGGCg- -3'
miRNA:   3'- aCCa-GUGCUUGCAC-GCCauG--UCCGac -5'
21527 5' -54.9 NC_004812.1 + 27940 0.66 0.93708
Target:  5'- aGGUCcCGAccccgaggACGUGCGcGUGCuGGUg- -3'
miRNA:   3'- aCCAGuGCU--------UGCACGC-CAUGuCCGac -5'
21527 5' -54.9 NC_004812.1 + 20432 0.66 0.932088
Target:  5'- cGGUCGauGugGUGCGcGUccaGCAGGCc- -3'
miRNA:   3'- aCCAGUgcUugCACGC-CA---UGUCCGac -5'
21527 5' -54.9 NC_004812.1 + 72057 0.66 0.932088
Target:  5'- gGGUCGgGGGCGcUGgGGgcgGC-GGCUGu -3'
miRNA:   3'- aCCAGUgCUUGC-ACgCCa--UGuCCGAC- -5'
21527 5' -54.9 NC_004812.1 + 44700 0.66 0.932088
Target:  5'- ----aACGAACGUGCGGUACc-GCUu -3'
miRNA:   3'- accagUGCUUGCACGCCAUGucCGAc -5'
21527 5' -54.9 NC_004812.1 + 59606 0.66 0.932088
Target:  5'- cGGUCGCGGcgcuagaggGCGUGgGGgugGGGCg- -3'
miRNA:   3'- aCCAGUGCU---------UGCACgCCaugUCCGac -5'
21527 5' -54.9 NC_004812.1 + 131416 0.66 0.926855
Target:  5'- cUGG--GCGGACGUGCGc-GCGGGCg- -3'
miRNA:   3'- -ACCagUGCUUGCACGCcaUGUCCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.