miRNA display CGI


Results 21 - 40 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21529 3' -58.5 NC_004812.1 + 16193 0.66 0.812663
Target:  5'- ---aUCGC-CAGCagCGCGCGGCGgacCCGg -3'
miRNA:   3'- gaacAGCGcGUCGa-GCGCGUCGU---GGC- -5'
21529 3' -58.5 NC_004812.1 + 149132 0.66 0.812663
Target:  5'- --cGUcCGCGCGGCcgccggggCGCGCGGUcCCc -3'
miRNA:   3'- gaaCA-GCGCGUCGa-------GCGCGUCGuGGc -5'
21529 3' -58.5 NC_004812.1 + 126993 0.66 0.812663
Target:  5'- --cGgCGgGCGGCg-GCGgAGCGCCGg -3'
miRNA:   3'- gaaCaGCgCGUCGagCGCgUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 103253 0.66 0.812663
Target:  5'- gUUGaucUCGCGCAGg-CGCGCGGgGgCGa -3'
miRNA:   3'- gAAC---AGCGCGUCgaGCGCGUCgUgGC- -5'
21529 3' -58.5 NC_004812.1 + 1485 0.66 0.812663
Target:  5'- --cGgCGgGCGGCg-GCGgAGCGCCGg -3'
miRNA:   3'- gaaCaGCgCGUCGagCGCgUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 137002 0.66 0.812663
Target:  5'- ----aCGCGCGGCUgGCGUGGgccCGCCu -3'
miRNA:   3'- gaacaGCGCGUCGAgCGCGUC---GUGGc -5'
21529 3' -58.5 NC_004812.1 + 23624 0.66 0.812663
Target:  5'- --cGUcCGCGCGGCcgccggggCGCGCGGUcCCc -3'
miRNA:   3'- gaaCA-GCGCGUCGa-------GCGCGUCGuGGc -5'
21529 3' -58.5 NC_004812.1 + 71319 0.66 0.812663
Target:  5'- -gUGU-GCGCGGCuUCGUGgGGC-CCGc -3'
miRNA:   3'- gaACAgCGCGUCG-AGCGCgUCGuGGC- -5'
21529 3' -58.5 NC_004812.1 + 45626 0.66 0.812663
Target:  5'- --gGUCGCGCGGCUguuccgccCGUGCuugaACCGc -3'
miRNA:   3'- gaaCAGCGCGUCGA--------GCGCGucg-UGGC- -5'
21529 3' -58.5 NC_004812.1 + 48152 0.66 0.812663
Target:  5'- --cGagGCGCGGCgcCGgGCGGCgGCCGc -3'
miRNA:   3'- gaaCagCGCGUCGa-GCgCGUCG-UGGC- -5'
21529 3' -58.5 NC_004812.1 + 148274 0.66 0.812663
Target:  5'- --gGcCGCGCccGGCagCGCggcgGCGGCGCCGg -3'
miRNA:   3'- gaaCaGCGCG--UCGa-GCG----CGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 80319 0.66 0.812663
Target:  5'- --cGcCGCGCuGCUggaggcggcCGCGC-GCGCCGu -3'
miRNA:   3'- gaaCaGCGCGuCGA---------GCGCGuCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 152644 0.66 0.812663
Target:  5'- --cGgCGCGCGGCg-GgGgGGCGCCGg -3'
miRNA:   3'- gaaCaGCGCGUCGagCgCgUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 53289 0.66 0.811801
Target:  5'- -cUGUCGUGCcuguuccAGCcgcuccuauUCGUGCacGGCACCGu -3'
miRNA:   3'- gaACAGCGCG-------UCG---------AGCGCG--UCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 144998 0.66 0.810074
Target:  5'- --gGcCGUGCGccgcuacggacccuGCUCGCGCGGCGuCCc -3'
miRNA:   3'- gaaCaGCGCGU--------------CGAGCGCGUCGU-GGc -5'
21529 3' -58.5 NC_004812.1 + 51508 0.66 0.804855
Target:  5'- uUUGgcCGCGCAGggucccgcccccggCGCaGCGGCGCCGg -3'
miRNA:   3'- gAACa-GCGCGUCga------------GCG-CGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 9044 0.66 0.80398
Target:  5'- -aUGcCGUacGCGGC-CGCGCcGGCACCc -3'
miRNA:   3'- gaACaGCG--CGUCGaGCGCG-UCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 106509 0.66 0.80398
Target:  5'- --gGUC-CGCGGC--GCGgGGCGCCGg -3'
miRNA:   3'- gaaCAGcGCGUCGagCGCgUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 20159 0.66 0.80398
Target:  5'- ----cCGCGCGGaUUCGCcuGCGGUGCCGc -3'
miRNA:   3'- gaacaGCGCGUC-GAGCG--CGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 30359 0.66 0.80398
Target:  5'- --cGUCGCGUcgAGC-CGCuCGGCgGCCGg -3'
miRNA:   3'- gaaCAGCGCG--UCGaGCGcGUCG-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.