miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21529 5' -53.1 NC_004812.1 + 66029 0.66 0.974615
Target:  5'- uCCACCAGCU--GUGGAC-GACGguGc -3'
miRNA:   3'- cGGUGGUUGAggCACUUGaCUGCguC- -5'
21529 5' -53.1 NC_004812.1 + 154375 0.66 0.974615
Target:  5'- cGCCGCCGcGCcgCgCGUGcGCUGGgcCGCGGg -3'
miRNA:   3'- -CGGUGGU-UGa-G-GCACuUGACU--GCGUC- -5'
21529 5' -53.1 NC_004812.1 + 135829 0.66 0.974615
Target:  5'- cGCCGCagguGCUCCaG-GAACgGaACGCAGa -3'
miRNA:   3'- -CGGUGgu--UGAGG-CaCUUGaC-UGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 94851 0.66 0.974615
Target:  5'- cGCCGCCGgacugACggagCUGUGucgggcGCUGACGCc- -3'
miRNA:   3'- -CGGUGGU-----UGa---GGCACu-----UGACUGCGuc -5'
21529 5' -53.1 NC_004812.1 + 69323 0.66 0.974615
Target:  5'- aCCAgCUGACUCuCGUGGGC--GCGCAGc -3'
miRNA:   3'- cGGU-GGUUGAG-GCACUUGacUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 78752 0.66 0.974615
Target:  5'- cGCCGCCGAagaCCGgGAGgUG-CGCGGc -3'
miRNA:   3'- -CGGUGGUUga-GGCaCUUgACuGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 28867 0.66 0.974615
Target:  5'- cGCCGCCGcGCcgCgCGUGcGCUGGgcCGCGGg -3'
miRNA:   3'- -CGGUGGU-UGa-G-GCACuUGACU--GCGUC- -5'
21529 5' -53.1 NC_004812.1 + 14441 0.66 0.974615
Target:  5'- aGCgCGCCAACgauggcgcCCGUGuGGCcggagGGCGCGGg -3'
miRNA:   3'- -CG-GUGGUUGa-------GGCAC-UUGa----CUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 125909 0.66 0.974615
Target:  5'- cGUCGCCAACUCCaucuuCgUGugGCGGc -3'
miRNA:   3'- -CGGUGGUUGAGGcacuuG-ACugCGUC- -5'
21529 5' -53.1 NC_004812.1 + 56792 0.66 0.974615
Target:  5'- cUCACCGGCgCCGUucGCgcGGCGCAGc -3'
miRNA:   3'- cGGUGGUUGaGGCAcuUGa-CUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 58762 0.66 0.974615
Target:  5'- gGCCGgCGGCgcCCGgcGAGCgagGGCGCGGu -3'
miRNA:   3'- -CGGUgGUUGa-GGCa-CUUGa--CUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 82732 0.66 0.973816
Target:  5'- gGCCGCCgAGCUguacgccgcccugaCCGcGAcgacGCUGACGCGc -3'
miRNA:   3'- -CGGUGG-UUGA--------------GGCaCU----UGACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 80855 0.66 0.973816
Target:  5'- cGCCGCCGagACguacgccgagauguUCCGggugGAcacggagccGCUGGCGCGGc -3'
miRNA:   3'- -CGGUGGU--UG--------------AGGCa---CU---------UGACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 26463 0.66 0.971881
Target:  5'- gGCCGCCGGCgcgcccgcgcCCGUgugggcgcccGAGCUgggcGACGCGGc -3'
miRNA:   3'- -CGGUGGUUGa---------GGCA----------CUUGA----CUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 151971 0.66 0.971881
Target:  5'- gGCCGCCGGCgcgcccgcgcCCGUgugggcgcccGAGCUgggcGACGCGGc -3'
miRNA:   3'- -CGGUGGUUGa---------GGCA----------CUUGA----CUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 25338 0.66 0.971881
Target:  5'- cGCCACCAGCcggCgGUGGGC-GGCGa-- -3'
miRNA:   3'- -CGGUGGUUGa--GgCACUUGaCUGCguc -5'
21529 5' -53.1 NC_004812.1 + 94091 0.66 0.971881
Target:  5'- uGCCGCCcGCUCgCGUGcgccCUGGCccugguGCGGg -3'
miRNA:   3'- -CGGUGGuUGAG-GCACuu--GACUG------CGUC- -5'
21529 5' -53.1 NC_004812.1 + 87102 0.66 0.968942
Target:  5'- cGUCGCC---UUCGUGGAUuacgUGACGCAGc -3'
miRNA:   3'- -CGGUGGuugAGGCACUUG----ACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 11830 0.66 0.968942
Target:  5'- cCCACCAacGCUCCagccGCUGGCGCc- -3'
miRNA:   3'- cGGUGGU--UGAGGcacuUGACUGCGuc -5'
21529 5' -53.1 NC_004812.1 + 85401 0.66 0.968942
Target:  5'- gGCCGCCcGCUcgCCGc---CUGGCGCGGc -3'
miRNA:   3'- -CGGUGGuUGA--GGCacuuGACUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.