miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21531 3' -58.5 NC_004812.1 + 94344 0.66 0.783982
Target:  5'- cGC-GGCCUGCGcGGGGcgggcggcGUUggagCGCCGCc -3'
miRNA:   3'- aCGaCCGGAUGC-UCCC--------UAGa---GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 13284 0.66 0.783982
Target:  5'- cGgaGGCCUcggcGCGGcGGGGcguccgcgUCUCcGCCGCg -3'
miRNA:   3'- aCgaCCGGA----UGCU-CCCU--------AGAG-CGGUG- -5'
21531 3' -58.5 NC_004812.1 + 154957 0.66 0.783982
Target:  5'- cGC-GGCCaACGGGGGAg--CGgCGCg -3'
miRNA:   3'- aCGaCCGGaUGCUCCCUagaGCgGUG- -5'
21531 3' -58.5 NC_004812.1 + 4386 0.66 0.774794
Target:  5'- -cCUGGCCgagGCGucgcccGGGuGGUCcCGCCGCa -3'
miRNA:   3'- acGACCGGa--UGC------UCC-CUAGaGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 96721 0.66 0.774794
Target:  5'- gUGCcgGGCC-ACGAGGGc-CggGCCGCg -3'
miRNA:   3'- -ACGa-CCGGaUGCUCCCuaGagCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 81407 0.66 0.774794
Target:  5'- gGCcGcCCUGCGGGaGGcgCUCGCgGCa -3'
miRNA:   3'- aCGaCcGGAUGCUC-CCuaGAGCGgUG- -5'
21531 3' -58.5 NC_004812.1 + 35287 0.66 0.774794
Target:  5'- -cCUGGCCgagGCGucgcccGGGuGGUCcCGCCGCa -3'
miRNA:   3'- acGACCGGa--UGC------UCC-CUAGaGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 114637 0.66 0.774794
Target:  5'- cGCUGGCCcgugAUGAGGacGUCggugcggccCGCCACc -3'
miRNA:   3'- aCGACCGGa---UGCUCCc-UAGa--------GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 154579 0.66 0.773869
Target:  5'- gGCUGGCCccgauggUGCGAccGGAgcuuuaUUCGCCGCg -3'
miRNA:   3'- aCGACCGG-------AUGCUc-CCUa-----GAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 123678 0.66 0.773869
Target:  5'- gGCUGGCCccgauggUGCGAccGGAgcuuuaUUCGCCGCg -3'
miRNA:   3'- aCGACCGG-------AUGCUc-CCUa-----GAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 124330 0.67 0.765482
Target:  5'- aGCUcacGGCCc-CGGGGGGggaCGCCGCg -3'
miRNA:   3'- aCGA---CCGGauGCUCCCUagaGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 17559 0.67 0.765482
Target:  5'- gUGCgUGGCgUAuaaccCGcaGGGGGUcCUCGCCGCc -3'
miRNA:   3'- -ACG-ACCGgAU-----GC--UCCCUA-GAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 72295 0.67 0.765482
Target:  5'- gUGCgGGCCgggGCGGGGGGacggaucgaUCgggCGCgGCc -3'
miRNA:   3'- -ACGaCCGGa--UGCUCCCU---------AGa--GCGgUG- -5'
21531 3' -58.5 NC_004812.1 + 137482 0.67 0.757001
Target:  5'- cGCUGGCCgcccacgccgagcugGCGGGGGc-CUgGcCCGCg -3'
miRNA:   3'- aCGACCGGa--------------UGCUCCCuaGAgC-GGUG- -5'
21531 3' -58.5 NC_004812.1 + 74271 0.67 0.756053
Target:  5'- cGCgGGCCUcACGGGGGGcgUCcugaGCCAg -3'
miRNA:   3'- aCGaCCGGA-UGCUCCCU--AGag--CGGUg -5'
21531 3' -58.5 NC_004812.1 + 42013 0.67 0.756053
Target:  5'- cGCcgGGUCgaugGCGGGGGcgCgcggCGCCAa -3'
miRNA:   3'- aCGa-CCGGa---UGCUCCCuaGa---GCGGUg -5'
21531 3' -58.5 NC_004812.1 + 11913 0.67 0.756053
Target:  5'- aGCaGGCCcACG-GGGGUCU-GCCGg -3'
miRNA:   3'- aCGaCCGGaUGCuCCCUAGAgCGGUg -5'
21531 3' -58.5 NC_004812.1 + 124738 0.67 0.756053
Target:  5'- cGCUGGCCg--GGGGGA-C-CGCCcCg -3'
miRNA:   3'- aCGACCGGaugCUCCCUaGaGCGGuG- -5'
21531 3' -58.5 NC_004812.1 + 54640 0.67 0.756053
Target:  5'- cGCgGGCUcaccACG-GGGGUCgcCGCCGCg -3'
miRNA:   3'- aCGaCCGGa---UGCuCCCUAGa-GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 131912 0.67 0.746517
Target:  5'- cGCUcgcccggauaugGGCCU-CGcGGGAUCccgUGCCGCg -3'
miRNA:   3'- aCGA------------CCGGAuGCuCCCUAGa--GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.