miRNA display CGI


Results 21 - 40 of 321 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21531 5' -62.4 NC_004812.1 + 127963 0.66 0.669978
Target:  5'- ---aGUCCGGcGGGCGCgUCggagGCCCCCa -3'
miRNA:   3'- gacaCAGGCU-CCUGCGgGG----UGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 64510 0.66 0.669977
Target:  5'- ---cGcCCGAGGAgGCCgUGCUCCUCg -3'
miRNA:   3'- gacaCaGGCUCCUgCGGgGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 83971 0.66 0.669977
Target:  5'- ---cGUCCcugGGGGGCgucgcgGCCCgGCCCUCCu -3'
miRNA:   3'- gacaCAGG---CUCCUG------CGGGgUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 124857 0.66 0.660331
Target:  5'- -cGUGgg-GcGGGCGCCgCGCCCCCg -3'
miRNA:   3'- gaCACaggCuCCUGCGGgGUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 151381 0.66 0.660331
Target:  5'- uUGUGcuucUCCcGGGAgcCCCCGCCCCUCn -3'
miRNA:   3'- gACAC----AGGcUCCUgcGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 147753 0.66 0.660331
Target:  5'- ----uUCCcc---CGCCCCACCCCCCg -3'
miRNA:   3'- gacacAGGcuccuGCGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 26046 0.66 0.660331
Target:  5'- -cGgggCCGGGGgcgcgGCGCCCUcgcGCgCCCCCg -3'
miRNA:   3'- gaCacaGGCUCC-----UGCGGGG---UG-GGGGG- -5'
21531 5' -62.4 NC_004812.1 + 151531 0.66 0.660331
Target:  5'- -----cCCGGccGGAC-CCCgGCCCCCCg -3'
miRNA:   3'- gacacaGGCU--CCUGcGGGgUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 145880 0.66 0.66033
Target:  5'- ---cG-CCGuuGcCGCCCCGCCgCCCCu -3'
miRNA:   3'- gacaCaGGCucCuGCGGGGUGG-GGGG- -5'
21531 5' -62.4 NC_004812.1 + 94408 0.66 0.66033
Target:  5'- -gGUGgcguuggCCGAaGAcgucCGCCCCcuguucgcgGCCCCCCg -3'
miRNA:   3'- gaCACa------GGCUcCU----GCGGGG---------UGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 94047 0.66 0.66033
Target:  5'- gUGUGaaggacgCCGAGGAUccucaggggGCCCCcgggaACCCCUg -3'
miRNA:   3'- gACACa------GGCUCCUG---------CGGGG-----UGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 120480 0.66 0.66033
Target:  5'- uUGUGcuucUCCcGGGAgcCCCCGCCCCUCn -3'
miRNA:   3'- gACAC----AGGcUCCUgcGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 116852 0.66 0.66033
Target:  5'- ----uUCCcc---CGCCCCACCCCCCg -3'
miRNA:   3'- gacacAGGcuccuGCGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 120630 0.66 0.66033
Target:  5'- -----cCCGGccGGAC-CCCgGCCCCCCg -3'
miRNA:   3'- gacacaGGCU--CCUGcGGGgUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 151555 0.66 0.66033
Target:  5'- -cGgggCCGGGGgcgcgGCGCCCUcgcGCgCCCCCg -3'
miRNA:   3'- gaCacaGGCUCC-----UGCGGGG---UG-GGGGG- -5'
21531 5' -62.4 NC_004812.1 + 29094 0.66 0.66033
Target:  5'- ---cG-CCGAGGACG-CCgGCCCCgCg -3'
miRNA:   3'- gacaCaGGCUCCUGCgGGgUGGGGgG- -5'
21531 5' -62.4 NC_004812.1 + 139758 0.66 0.654532
Target:  5'- ---gGUcCCGGGGcccgcccggacucccAC-CCCUACCCCCCg -3'
miRNA:   3'- gacaCA-GGCUCC---------------UGcGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 39294 0.66 0.650664
Target:  5'- ---gGUCCGGGGGCGCggcgggggCUCGgCCCCg -3'
miRNA:   3'- gacaCAGGCUCCUGCG--------GGGUgGGGGg -5'
21531 5' -62.4 NC_004812.1 + 94184 0.66 0.650664
Target:  5'- ---aGUCC-AGGacaucGCGCUCCuCCCCCCc -3'
miRNA:   3'- gacaCAGGcUCC-----UGCGGGGuGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 8393 0.66 0.650663
Target:  5'- ---gGUCCGGGGGCGCggcgggggCUCGgCCCCg -3'
miRNA:   3'- gacaCAGGCUCCUGCG--------GGGUgGGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.