Results 1 - 20 of 1263 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21532 | 3' | -69.6 | NC_004812.1 | + | 152088 | 0.66 | 0.372382 |
Target: 5'- gGCCGCCcagcagcgcGCCCuggucgaacagcaugCCGCCCaCCGGGGUc- -3' miRNA: 3'- -UGGCGG---------CGGG---------------GGCGGGcGGCCUCGcg -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 121187 | 0.66 | 0.372381 |
Target: 5'- gGCCGCCcagcagcgcGCCCuggucgaacagcaugCCGCCCaCCGGGGUc- -3' miRNA: 3'- -UGGCGG---------CGGG---------------GGCGGGcGGCCUCGcg -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 57831 | 0.66 | 0.370167 |
Target: 5'- cCCGUCGCCCCacuacgaggccucgcUGCgccuccugucgucgCCGCCGGGggccugcccccGCGCg -3' miRNA: 3'- uGGCGGCGGGG---------------GCG--------------GGCGGCCU-----------CGCG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 55448 | 0.66 | 0.369431 |
Target: 5'- gGCCGCCGCCuUCCGCa-GCUcccugGGAuCGCu -3' miRNA: 3'- -UGGCGGCGG-GGGCGggCGG-----CCUcGCG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 115475 | 0.66 | 0.369431 |
Target: 5'- cGCCGCgCGCgUgCgGCCgCGCCGG-GCGg -3' miRNA: 3'- -UGGCG-GCG-GgGgCGG-GCGGCCuCGCg -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 90879 | 0.66 | 0.369431 |
Target: 5'- gAUCGCCGUCUCC-UCC-UCGGGGUGCc -3' miRNA: 3'- -UGGCGGCGGGGGcGGGcGGCCUCGCG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 117800 | 0.66 | 0.369431 |
Target: 5'- cGCCGCaGCCCCCGacaCCUGC-GG-GCGa -3' miRNA: 3'- -UGGCGgCGGGGGC---GGGCGgCCuCGCg -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 70956 | 0.66 | 0.369431 |
Target: 5'- uACUGCgGCgCCUCGaCCUGCCcgGGAGaGCa -3' miRNA: 3'- -UGGCGgCG-GGGGC-GGGCGG--CCUCgCG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 57746 | 0.66 | 0.369431 |
Target: 5'- cGCCGUCGagCUggGCCCGgaUGGAGCGCa -3' miRNA: 3'- -UGGCGGCg-GGggCGGGCg-GCCUCGCG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 144317 | 0.66 | 0.369431 |
Target: 5'- gGCCGUCGUggguuucgCUCCGCCCccCCGGgcaGGUGCu -3' miRNA: 3'- -UGGCGGCG--------GGGGCGGGc-GGCC---UCGCG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 18646 | 0.66 | 0.369431 |
Target: 5'- gACC-CCGCCCcgacgaggggCCGCCgCGCCGGgaaaGGC-Cg -3' miRNA: 3'- -UGGcGGCGGG----------GGCGG-GCGGCC----UCGcG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 20077 | 0.66 | 0.369431 |
Target: 5'- cGCgCGCCaGCCagcggaCGCCuCGgaGGAGCGCg -3' miRNA: 3'- -UG-GCGG-CGGgg----GCGG-GCggCCUCGCG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 51548 | 0.66 | 0.369431 |
Target: 5'- gACCccagGCCGUCCCggcgagcgcaCGCgCaGCCGGAgGCGCc -3' miRNA: 3'- -UGG----CGGCGGGG----------GCGgG-CGGCCU-CGCG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 128822 | 0.66 | 0.369431 |
Target: 5'- gGCC-CCGCCCUCuCCC-CCGGcGgGCu -3' miRNA: 3'- -UGGcGGCGGGGGcGGGcGGCCuCgCG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 109500 | 0.66 | 0.369431 |
Target: 5'- gGCUGCUGCgUCUCGCCgCGaCGGAGC-Cg -3' miRNA: 3'- -UGGCGGCG-GGGGCGG-GCgGCCUCGcG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 105053 | 0.66 | 0.369431 |
Target: 5'- -gCGCCGCUCCgG-CCGC-GG-GCGCa -3' miRNA: 3'- ugGCGGCGGGGgCgGGCGgCCuCGCG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 32274 | 0.66 | 0.369431 |
Target: 5'- uCCGCggCGUCCCCcCCCgggGCCGuGAGCuGCu -3' miRNA: 3'- uGGCG--GCGGGGGcGGG---CGGC-CUCG-CG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 50453 | 0.66 | 0.369431 |
Target: 5'- gGCCGCCGaggccgagCUCgGCCuCGgCGG-GCGCg -3' miRNA: 3'- -UGGCGGCg-------GGGgCGG-GCgGCCuCGCG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 40904 | 0.66 | 0.369431 |
Target: 5'- uGCCG-UGUCCCCaugcccuggGCUCGCCucGGGCGCg -3' miRNA: 3'- -UGGCgGCGGGGG---------CGGGCGGc-CUCGCG- -5' |
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21532 | 3' | -69.6 | NC_004812.1 | + | 35724 | 0.66 | 0.368696 |
Target: 5'- gACCcCCGCgucuccgCCCCGcCCCGCUacAGCGCc -3' miRNA: 3'- -UGGcGGCG-------GGGGC-GGGCGGccUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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