miRNA display CGI


Results 61 - 80 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 120369 0.69 0.605686
Target:  5'- --cUC-UCCCgggCCUCCCCC-CgCCUCc -3'
miRNA:   3'- gaaAGaAGGGa--GGAGGGGGaGgGGAG- -5'
21533 3' -58.7 NC_004812.1 + 55746 0.69 0.605686
Target:  5'- -----cUCCCccgCCUCCCCCgcggCCCCg- -3'
miRNA:   3'- gaaagaAGGGa--GGAGGGGGa---GGGGag -5'
21533 3' -58.7 NC_004812.1 + 150465 0.69 0.645928
Target:  5'- ------gCCC-CCgacCCCCUUCCCCUCg -3'
miRNA:   3'- gaaagaaGGGaGGa--GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 118738 0.69 0.635864
Target:  5'- cCUUUCccCCC-CC-CCCCC-CCCCUUg -3'
miRNA:   3'- -GAAAGaaGGGaGGaGGGGGaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 149639 0.69 0.635864
Target:  5'- cCUUUCccCCC-CC-CCCCC-CCCCUUg -3'
miRNA:   3'- -GAAAGaaGGGaGGaGGGGGaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 151270 0.69 0.605686
Target:  5'- --cUC-UCCCgggCCUCCCCC-CgCCUCc -3'
miRNA:   3'- gaaAGaAGGGa--GGAGGGGGaGgGGAG- -5'
21533 3' -58.7 NC_004812.1 + 289 0.69 0.605686
Target:  5'- ------cCCCUCggCCCCCUCCCgUCc -3'
miRNA:   3'- gaaagaaGGGAGgaGGGGGAGGGgAG- -5'
21533 3' -58.7 NC_004812.1 + 249 0.69 0.615736
Target:  5'- ------gCUCUCCUCCCCCcCCCCc- -3'
miRNA:   3'- gaaagaaGGGAGGAGGGGGaGGGGag -5'
21533 3' -58.7 NC_004812.1 + 104132 0.69 0.615736
Target:  5'- --gUCcUCCUUCCUCUCCaaCCCCUUc -3'
miRNA:   3'- gaaAGaAGGGAGGAGGGGgaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 119717 0.69 0.615736
Target:  5'- ------cCCCUCgUCCCCCcgaCCCUCg -3'
miRNA:   3'- gaaagaaGGGAGgAGGGGGag-GGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6859 0.69 0.625798
Target:  5'- -------gCCUCCUUCCCCUUCCCg- -3'
miRNA:   3'- gaaagaagGGAGGAGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 34054 0.69 0.625798
Target:  5'- ---gCUcCCCUCCgCCCCC-CCCCg- -3'
miRNA:   3'- gaaaGAaGGGAGGaGGGGGaGGGGag -5'
21533 3' -58.7 NC_004812.1 + 149899 0.69 0.645928
Target:  5'- uCUUUCcuUUCuCCUUCUCUCCC-CCCCa- -3'
miRNA:   3'- -GAAAG--AAG-GGAGGAGGGGGaGGGGag -5'
21533 3' -58.7 NC_004812.1 + 118998 0.69 0.645928
Target:  5'- uCUUUCcuUUCuCCUUCUCUCCC-CCCCa- -3'
miRNA:   3'- -GAAAG--AAG-GGAGGAGGGGGaGGGGag -5'
21533 3' -58.7 NC_004812.1 + 151379 0.7 0.555857
Target:  5'- uCUUgugCUUCUC-CCgggagCCCCCgCCCCUCu -3'
miRNA:   3'- -GAAa--GAAGGGaGGa----GGGGGaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 9946 0.7 0.565745
Target:  5'- --cUCUUgCCUCCgguccaacgCuCCCCUCCCCa- -3'
miRNA:   3'- gaaAGAAgGGAGGa--------G-GGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 1661 0.7 0.565745
Target:  5'- -----gUCCCcCCUCCCCCcCCCCcCg -3'
miRNA:   3'- gaaagaAGGGaGGAGGGGGaGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 363 0.7 0.565745
Target:  5'- ------cCCCUCCcgUCCCCCUCCCg-- -3'
miRNA:   3'- gaaagaaGGGAGG--AGGGGGAGGGgag -5'
21533 3' -58.7 NC_004812.1 + 58847 0.7 0.585651
Target:  5'- ---cCUUCCCUUUUCCCCCaccacacCCCCa- -3'
miRNA:   3'- gaaaGAAGGGAGGAGGGGGa------GGGGag -5'
21533 3' -58.7 NC_004812.1 + 125871 0.7 0.565745
Target:  5'- ------cCCCUCCcgUCCCCCUCCCg-- -3'
miRNA:   3'- gaaagaaGGGAGG--AGGGGGAGGGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.