miRNA display CGI


Results 81 - 100 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 125871 0.7 0.565745
Target:  5'- ------cCCCUCCcgUCCCCCUCCCg-- -3'
miRNA:   3'- gaaagaaGGGAGG--AGGGGGAGGGgag -5'
21533 3' -58.7 NC_004812.1 + 127169 0.7 0.565745
Target:  5'- -----gUCCCcCCUCCCCCcCCCCcCg -3'
miRNA:   3'- gaaagaAGGGaGGAGGGGGaGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 125896 0.7 0.565745
Target:  5'- --cUCUccgUCUCUCC-CCCCCgUCCCUCu -3'
miRNA:   3'- gaaAGA---AGGGAGGaGGGGGaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 58847 0.7 0.585651
Target:  5'- ---cCUUCCCUUUUCCCCCaccacacCCCCa- -3'
miRNA:   3'- gaaaGAAGGGAGGAGGGGGa------GGGGag -5'
21533 3' -58.7 NC_004812.1 + 149161 0.71 0.516867
Target:  5'- gUUUCcccccgCCCUUCUCUCCCagaCCCCUCc -3'
miRNA:   3'- gAAAGaa----GGGAGGAGGGGGa--GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 4075 0.71 0.507286
Target:  5'- --gUCgUCCUcgUCCUCCCCCgcggCCCCg- -3'
miRNA:   3'- gaaAGaAGGG--AGGAGGGGGa---GGGGag -5'
21533 3' -58.7 NC_004812.1 + 99261 0.71 0.516867
Target:  5'- --gUCuUUCCCUgCUUCCUCUCCCCc- -3'
miRNA:   3'- gaaAG-AAGGGAgGAGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 116094 0.71 0.526519
Target:  5'- ------nCCC-CCgcgcCCCCCUCCCCUCc -3'
miRNA:   3'- gaaagaaGGGaGGa---GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 145032 0.71 0.526519
Target:  5'- -----gUCCCUCC-CCCCCggugCCCCa- -3'
miRNA:   3'- gaaagaAGGGAGGaGGGGGa---GGGGag -5'
21533 3' -58.7 NC_004812.1 + 33134 0.71 0.526519
Target:  5'- gCUUUCgcgcCCCUCC-CUCUCUCCCCcCg -3'
miRNA:   3'- -GAAAGaa--GGGAGGaGGGGGAGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 118260 0.71 0.516867
Target:  5'- gUUUCcccccgCCCUUCUCUCCCagaCCCCUCc -3'
miRNA:   3'- gAAAGaa----GGGAGGAGGGGGa--GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 129584 0.71 0.507286
Target:  5'- --gUCgUCCUcgUCCUCCCCCgcggCCCCg- -3'
miRNA:   3'- gaaAGaAGGG--AGGAGGGGGa---GGGGag -5'
21533 3' -58.7 NC_004812.1 + 143758 0.71 0.507286
Target:  5'- -gUUCUUCCCcgcgguUCCUCCCgCgCCCCaUCg -3'
miRNA:   3'- gaAAGAAGGG------AGGAGGGgGaGGGG-AG- -5'
21533 3' -58.7 NC_004812.1 + 16952 0.71 0.526519
Target:  5'- --aUCaUCgCCaUCCUCuCCCCUgCCCCUCu -3'
miRNA:   3'- gaaAGaAG-GG-AGGAG-GGGGA-GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 115977 0.71 0.526519
Target:  5'- ------nCCC-CCgcgcCCCCCUCCCCUCc -3'
miRNA:   3'- gaaagaaGGGaGGa---GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 51158 0.71 0.526519
Target:  5'- --gUCcUCgCUCCgcgaCCCCCUCCCCg- -3'
miRNA:   3'- gaaAGaAGgGAGGa---GGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 9796 0.71 0.526519
Target:  5'- --cUCUUCCUUcCCUCggUCCCUCCCCc- -3'
miRNA:   3'- gaaAGAAGGGA-GGAG--GGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 133643 0.72 0.460609
Target:  5'- ------gCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaagaaGGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 132437 0.72 0.460609
Target:  5'- -gUUCUUCUCcCCUCCCCCcacaaCCCCg- -3'
miRNA:   3'- gaAAGAAGGGaGGAGGGGGa----GGGGag -5'
21533 3' -58.7 NC_004812.1 + 119693 0.72 0.451545
Target:  5'- --gUCgcugCCCgCgUCCCCCuUCCCCUCg -3'
miRNA:   3'- gaaAGaa--GGGaGgAGGGGG-AGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.