miRNA display CGI


Results 81 - 100 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 24976 0.74 0.336012
Target:  5'- ------cCCCcCCUCCCCCUCCCCc- -3'
miRNA:   3'- gaaagaaGGGaGGAGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 150522 0.74 0.358872
Target:  5'- ----gUUCCCgCCgacCCCCUUCCCCUCg -3'
miRNA:   3'- gaaagAAGGGaGGa--GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 80411 0.74 0.358872
Target:  5'- --gUCUgcccaUCCCUUCUUUCCCUCCCCg- -3'
miRNA:   3'- gaaAGA-----AGGGAGGAGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 119621 0.74 0.358872
Target:  5'- ----gUUCCCgCCgacCCCCUUCCCCUCg -3'
miRNA:   3'- gaaagAAGGGaGGa--GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 131666 0.74 0.358872
Target:  5'- cCUUUCcgCCCUCuCUCCCCg-CCCCUg -3'
miRNA:   3'- -GAAAGaaGGGAG-GAGGGGgaGGGGAg -5'
21533 3' -58.7 NC_004812.1 + 6157 0.74 0.358872
Target:  5'- cCUUUCcgCCCUCuCUCCCCg-CCCCUg -3'
miRNA:   3'- -GAAAGaaGGGAG-GAGGGGgaGGGGAg -5'
21533 3' -58.7 NC_004812.1 + 57492 0.74 0.374705
Target:  5'- uCUUUCUcCCCagcgUUCUCCCUCUCCCC-Ca -3'
miRNA:   3'- -GAAAGAaGGG----AGGAGGGGGAGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 118471 0.73 0.391005
Target:  5'- -cUUUUUCCCcuUCCUCCCCCaaacCCCCa- -3'
miRNA:   3'- gaAAGAAGGG--AGGAGGGGGa---GGGGag -5'
21533 3' -58.7 NC_004812.1 + 133301 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133353 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 116036 0.73 0.391005
Target:  5'- ------nCCC-CCgcgCCCCCUCCCCUCc -3'
miRNA:   3'- gaaagaaGGGaGGa--GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133457 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7793 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7845 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7897 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 8026 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133405 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133613 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133561 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133509 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.