miRNA display CGI


Results 101 - 120 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 8078 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7897 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7793 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7092 0.73 0.397653
Target:  5'- cCUUUUUUUCCUCucugucuCUCCCCCUcggacccccaccgCCCCUCu -3'
miRNA:   3'- -GAAAGAAGGGAG-------GAGGGGGA-------------GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 37993 0.73 0.397653
Target:  5'- cCUUUUUUUCCUCucugucuCUCCCCCUcggacccccaccgCCCCUCu -3'
miRNA:   3'- -GAAAGAAGGGAG-------GAGGGGGA-------------GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 15801 0.73 0.399326
Target:  5'- uUUUCcaUUUCCgCCUCCCCaUCCCCUCc -3'
miRNA:   3'- gAAAG--AAGGGaGGAGGGGgAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 8796 0.73 0.40776
Target:  5'- -------gCCUCCUCCCCCUCCCg-- -3'
miRNA:   3'- gaaagaagGGAGGAGGGGGAGGGgag -5'
21533 3' -58.7 NC_004812.1 + 39697 0.73 0.40776
Target:  5'- -------gCCUCCUCCCCCUCCCg-- -3'
miRNA:   3'- gaaagaagGGAGGAGGGGGAGGGgag -5'
21533 3' -58.7 NC_004812.1 + 145153 0.73 0.416305
Target:  5'- gUUUCUUCCU--UUCCCCCUCCCggCUCc -3'
miRNA:   3'- gAAAGAAGGGagGAGGGGGAGGG--GAG- -5'
21533 3' -58.7 NC_004812.1 + 120425 0.73 0.424958
Target:  5'- -cUUCUccUCCCgggCCUCCCCC-CgCCUCc -3'
miRNA:   3'- gaAAGA--AGGGa--GGAGGGGGaGgGGAG- -5'
21533 3' -58.7 NC_004812.1 + 151326 0.73 0.424958
Target:  5'- -cUUCUccUCCCgggCCUCCCCC-CgCCUCc -3'
miRNA:   3'- gaAAGA--AGGGa--GGAGGGGGaGgGGAG- -5'
21533 3' -58.7 NC_004812.1 + 147731 0.72 0.433717
Target:  5'- -----aUCCCUCCUCCgCCUCCUCc- -3'
miRNA:   3'- gaaagaAGGGAGGAGGgGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 101909 0.72 0.433717
Target:  5'- ------cCCCUCgUCCCCCUCcuggCCCUCg -3'
miRNA:   3'- gaaagaaGGGAGgAGGGGGAG----GGGAG- -5'
21533 3' -58.7 NC_004812.1 + 116830 0.72 0.433717
Target:  5'- -----aUCCCUCCUCCgCCUCCUCc- -3'
miRNA:   3'- gaaagaAGGGAGGAGGgGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 119693 0.72 0.451545
Target:  5'- --gUCgcugCCCgCgUCCCCCuUCCCCUCg -3'
miRNA:   3'- gaaAGaa--GGGaGgAGGGGG-AGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 150594 0.72 0.451545
Target:  5'- --gUCgcugCCCgCgUCCCCCuUCCCCUCg -3'
miRNA:   3'- gaaAGaa--GGGaGgAGGGGG-AGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133643 0.72 0.460609
Target:  5'- ------gCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaagaaGGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 132437 0.72 0.460609
Target:  5'- -gUUCUUCUCcCCUCCCCCcacaaCCCCg- -3'
miRNA:   3'- gaAAGAAGGGaGGAGGGGGa----GGGGag -5'
21533 3' -58.7 NC_004812.1 + 6929 0.72 0.460609
Target:  5'- -gUUCUUCUCcCCUCCCCCcacaaCCCCg- -3'
miRNA:   3'- gaAAGAAGGGaGGAGGGGGa----GGGGag -5'
21533 3' -58.7 NC_004812.1 + 7927 0.72 0.460609
Target:  5'- ------gCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaagaaGGGAGG--AGGGGGa----GGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.