Results 81 - 100 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21533 | 3' | -58.7 | NC_004812.1 | + | 125896 | 0.7 | 0.565745 |
Target: 5'- --cUCUccgUCUCUCC-CCCCCgUCCCUCu -3' miRNA: 3'- gaaAGA---AGGGAGGaGGGGGaGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 127169 | 0.7 | 0.565745 |
Target: 5'- -----gUCCCcCCUCCCCCcCCCCcCg -3' miRNA: 3'- gaaagaAGGGaGGAGGGGGaGGGGaG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 151379 | 0.7 | 0.555857 |
Target: 5'- uCUUgugCUUCUC-CCgggagCCCCCgCCCCUCu -3' miRNA: 3'- -GAAa--GAAGGGaGGa----GGGGGaGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 120478 | 0.7 | 0.555857 |
Target: 5'- uCUUgugCUUCUC-CCgggagCCCCCgCCCCUCu -3' miRNA: 3'- -GAAa--GAAGGGaGGa----GGGGGaGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 16952 | 0.71 | 0.526519 |
Target: 5'- --aUCaUCgCCaUCCUCuCCCCUgCCCCUCu -3' miRNA: 3'- gaaAGaAG-GG-AGGAG-GGGGA-GGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 9796 | 0.71 | 0.526519 |
Target: 5'- --cUCUUCCUUcCCUCggUCCCUCCCCc- -3' miRNA: 3'- gaaAGAAGGGA-GGAG--GGGGAGGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 51158 | 0.71 | 0.526519 |
Target: 5'- --gUCcUCgCUCCgcgaCCCCCUCCCCg- -3' miRNA: 3'- gaaAGaAGgGAGGa---GGGGGAGGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 116094 | 0.71 | 0.526519 |
Target: 5'- ------nCCC-CCgcgcCCCCCUCCCCUCc -3' miRNA: 3'- gaaagaaGGGaGGa---GGGGGAGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 115977 | 0.71 | 0.526519 |
Target: 5'- ------nCCC-CCgcgcCCCCCUCCCCUCc -3' miRNA: 3'- gaaagaaGGGaGGa---GGGGGAGGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 33134 | 0.71 | 0.526519 |
Target: 5'- gCUUUCgcgcCCCUCC-CUCUCUCCCCcCg -3' miRNA: 3'- -GAAAGaa--GGGAGGaGGGGGAGGGGaG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 145032 | 0.71 | 0.526519 |
Target: 5'- -----gUCCCUCC-CCCCCggugCCCCa- -3' miRNA: 3'- gaaagaAGGGAGGaGGGGGa---GGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 118260 | 0.71 | 0.516867 |
Target: 5'- gUUUCcccccgCCCUUCUCUCCCagaCCCCUCc -3' miRNA: 3'- gAAAGaa----GGGAGGAGGGGGa--GGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 99261 | 0.71 | 0.516867 |
Target: 5'- --gUCuUUCCCUgCUUCCUCUCCCCc- -3' miRNA: 3'- gaaAG-AAGGGAgGAGGGGGAGGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 149161 | 0.71 | 0.516867 |
Target: 5'- gUUUCcccccgCCCUUCUCUCCCagaCCCCUCc -3' miRNA: 3'- gAAAGaa----GGGAGGAGGGGGa--GGGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 129584 | 0.71 | 0.507286 |
Target: 5'- --gUCgUCCUcgUCCUCCCCCgcggCCCCg- -3' miRNA: 3'- gaaAGaAGGG--AGGAGGGGGa---GGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 143758 | 0.71 | 0.507286 |
Target: 5'- -gUUCUUCCCcgcgguUCCUCCCgCgCCCCaUCg -3' miRNA: 3'- gaAAGAAGGG------AGGAGGGgGaGGGG-AG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 4075 | 0.71 | 0.507286 |
Target: 5'- --gUCgUCCUcgUCCUCCCCCgcggCCCCg- -3' miRNA: 3'- gaaAGaAGGG--AGGAGGGGGa---GGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 104681 | 0.72 | 0.479018 |
Target: 5'- -----gUCCCguuUCCUcCCCCCUCaCCCUCc -3' miRNA: 3'- gaaagaAGGG---AGGA-GGGGGAG-GGGAG- -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 6929 | 0.72 | 0.460609 |
Target: 5'- -gUUCUUCUCcCCUCCCCCcacaaCCCCg- -3' miRNA: 3'- gaAAGAAGGGaGGAGGGGGa----GGGGag -5' |
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21533 | 3' | -58.7 | NC_004812.1 | + | 133643 | 0.72 | 0.460609 |
Target: 5'- ------gCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaagaaGGGAGG--AGGGGGa----GGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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