miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 6859 0.69 0.625798
Target:  5'- -------gCCUCCUUCCCCUUCCCg- -3'
miRNA:   3'- gaaagaagGGAGGAGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 6929 0.72 0.460609
Target:  5'- -gUUCUUCUCcCCUCCCCCcacaaCCCCg- -3'
miRNA:   3'- gaAAGAAGGGaGGAGGGGGa----GGGGag -5'
21533 3' -58.7 NC_004812.1 + 7001 0.68 0.695926
Target:  5'- ------gUgUUUCUCCUCCUCCCCUCg -3'
miRNA:   3'- gaaagaaGgGAGGAGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7092 0.73 0.397653
Target:  5'- cCUUUUUUUCCUCucugucuCUCCCCCUcggacccccaccgCCCCUCu -3'
miRNA:   3'- -GAAAGAAGGGAG-------GAGGGGGA-------------GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7199 1.1 0.001419
Target:  5'- cCUUUCUUCCCUCCUCCCCCUCCCCUCg -3'
miRNA:   3'- -GAAAGAAGGGAGGAGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7386 0.66 0.771855
Target:  5'- -gUUCUUUCCcCCUCCgCCgcucucucacggaCUCCCCUa -3'
miRNA:   3'- gaAAGAAGGGaGGAGG-GG-------------GAGGGGAg -5'
21533 3' -58.7 NC_004812.1 + 7793 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7845 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7897 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7927 0.72 0.460609
Target:  5'- ------gCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaagaaGGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7975 0.75 0.307215
Target:  5'- ---cCUcgCCCUcCCUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGA-GGAGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 8026 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 8078 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 8092 0.67 0.763504
Target:  5'- ---gCggCCCgcgCCgccCCCCCUCCCC-Cg -3'
miRNA:   3'- gaaaGaaGGGa--GGa--GGGGGAGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 8130 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 8796 0.73 0.40776
Target:  5'- -------gCCUCCUCCCCCUCCCg-- -3'
miRNA:   3'- gaaagaagGGAGGAGGGGGAGGGgag -5'
21533 3' -58.7 NC_004812.1 + 9796 0.71 0.526519
Target:  5'- --cUCUUCCUUcCCUCggUCCCUCCCCc- -3'
miRNA:   3'- gaaAGAAGGGA-GGAG--GGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 9888 0.76 0.286882
Target:  5'- -cUUCUUUCCUCCuuUCCCCCcCCCCcCg -3'
miRNA:   3'- gaAAGAAGGGAGG--AGGGGGaGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 9946 0.7 0.565745
Target:  5'- --cUCUUgCCUCCgguccaacgCuCCCCUCCCCa- -3'
miRNA:   3'- gaaAGAAgGGAGGa--------G-GGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 10593 0.67 0.744628
Target:  5'- ------cCCCgCCUCUUCCUCCCCgUCg -3'
miRNA:   3'- gaaagaaGGGaGGAGGGGGAGGGG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.