miRNA display CGI


Results 81 - 100 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 40114 0.67 0.725372
Target:  5'- -----gUCCgUCCgcgaCCCCCggCCCCUCc -3'
miRNA:   3'- gaaagaAGGgAGGa---GGGGGa-GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 40264 0.75 0.328632
Target:  5'- uUUUCUUUCCcCC-CCCCCUCCCUa- -3'
miRNA:   3'- gAAAGAAGGGaGGaGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 40371 0.67 0.735043
Target:  5'- uUUUCUguUCCCcCCcCCCCCcCCCCc- -3'
miRNA:   3'- gAAAGA--AGGGaGGaGGGGGaGGGGag -5'
21533 3' -58.7 NC_004812.1 + 50056 0.66 0.808569
Target:  5'- -------gCCUCCUCCCUcagCUCCCCg- -3'
miRNA:   3'- gaaagaagGGAGGAGGGG---GAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 51158 0.71 0.526519
Target:  5'- --gUCcUCgCUCCgcgaCCCCCUCCCCg- -3'
miRNA:   3'- gaaAGaAGgGAGGa---GGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 52405 0.66 0.772777
Target:  5'- ---cCUUCCCcCCgcucgcucucgCUCCCUCCCCg- -3'
miRNA:   3'- gaaaGAAGGGaGGa----------GGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 54339 0.68 0.676023
Target:  5'- ---cCUaCCCaucCCUCCCCC-CUCCUCg -3'
miRNA:   3'- gaaaGAaGGGa--GGAGGGGGaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 55746 0.69 0.605686
Target:  5'- -----cUCCCccgCCUCCCCCgcggCCCCg- -3'
miRNA:   3'- gaaagaAGGGa--GGAGGGGGa---GGGGag -5'
21533 3' -58.7 NC_004812.1 + 56777 0.75 0.300317
Target:  5'- ------cCCCUCCUCCCCCcccUCCCCg- -3'
miRNA:   3'- gaaagaaGGGAGGAGGGGG---AGGGGag -5'
21533 3' -58.7 NC_004812.1 + 57492 0.74 0.374705
Target:  5'- uCUUUCUcCCCagcgUUCUCCCUCUCCCC-Ca -3'
miRNA:   3'- -GAAAGAaGGG----AGGAGGGGGAGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 58847 0.7 0.585651
Target:  5'- ---cCUUCCCUUUUCCCCCaccacacCCCCa- -3'
miRNA:   3'- gaaaGAAGGGAGGAGGGGGa------GGGGag -5'
21533 3' -58.7 NC_004812.1 + 63102 0.66 0.781929
Target:  5'- ---cCUUCuCCUUCUCUCCCggCCgCUCu -3'
miRNA:   3'- gaaaGAAG-GGAGGAGGGGGa-GGgGAG- -5'
21533 3' -58.7 NC_004812.1 + 69810 0.67 0.744628
Target:  5'- --gUCgccgccgCCCUCCUCCUCUcCCCC-Cg -3'
miRNA:   3'- gaaAGaa-----GGGAGGAGGGGGaGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 78298 0.68 0.695926
Target:  5'- ---cCgggCCCUCCgCCCCCgCCCCg- -3'
miRNA:   3'- gaaaGaa-GGGAGGaGGGGGaGGGGag -5'
21533 3' -58.7 NC_004812.1 + 80411 0.74 0.358872
Target:  5'- --gUCUgcccaUCCCUUCUUUCCCUCCCCg- -3'
miRNA:   3'- gaaAGA-----AGGGAGGAGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 84268 0.66 0.799833
Target:  5'- ------cCCCgCC-CCCCCUCCCCc- -3'
miRNA:   3'- gaaagaaGGGaGGaGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 84466 0.67 0.715623
Target:  5'- ------gCCCgCCUCCCCCggCCCCg- -3'
miRNA:   3'- gaaagaaGGGaGGAGGGGGa-GGGGag -5'
21533 3' -58.7 NC_004812.1 + 97609 0.79 0.16905
Target:  5'- ---cCUUCCCcCUUCCCCCUCCCC-Cg -3'
miRNA:   3'- gaaaGAAGGGaGGAGGGGGAGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 99261 0.71 0.516867
Target:  5'- --gUCuUUCCCUgCUUCCUCUCCCCc- -3'
miRNA:   3'- gaaAG-AAGGGAgGAGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 101886 0.83 0.101594
Target:  5'- ---cCggCCC-CCUCCCCCUCCCCUCc -3'
miRNA:   3'- gaaaGaaGGGaGGAGGGGGAGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.