miRNA display CGI


Results 101 - 120 of 218 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 101909 0.72 0.433717
Target:  5'- ------cCCCUCgUCCCCCUCcuggCCCUCg -3'
miRNA:   3'- gaaagaaGGGAGgAGGGGGAG----GGGAG- -5'
21533 3' -58.7 NC_004812.1 + 102986 0.68 0.695926
Target:  5'- ---gCUUCuCCUCgUCCgCCCUCUCCa- -3'
miRNA:   3'- gaaaGAAG-GGAGgAGG-GGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 104132 0.69 0.615736
Target:  5'- --gUCcUCCUUCCUCUCCaaCCCCUUc -3'
miRNA:   3'- gaaAGaAGGGAGGAGGGGgaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 104336 0.68 0.685996
Target:  5'- -cUUCUccgCCCaUCC-CCCgCCUCCCCg- -3'
miRNA:   3'- gaAAGAa--GGG-AGGaGGG-GGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 104681 0.72 0.479018
Target:  5'- -----gUCCCguuUCCUcCCCCCUCaCCCUCc -3'
miRNA:   3'- gaaagaAGGG---AGGA-GGGGGAG-GGGAG- -5'
21533 3' -58.7 NC_004812.1 + 106974 0.66 0.817151
Target:  5'- ------cCCCaggggcgCCUCCCCCUCCCg-- -3'
miRNA:   3'- gaaagaaGGGa------GGAGGGGGAGGGgag -5'
21533 3' -58.7 NC_004812.1 + 110088 0.66 0.799833
Target:  5'- -gUUCgcggCCCUgCUCCCCCagacgacCCCCg- -3'
miRNA:   3'- gaAAGaa--GGGAgGAGGGGGa------GGGGag -5'
21533 3' -58.7 NC_004812.1 + 112307 0.66 0.781929
Target:  5'- -----cUCCCUCUccgCCCCCgCCCCg- -3'
miRNA:   3'- gaaagaAGGGAGGa--GGGGGaGGGGag -5'
21533 3' -58.7 NC_004812.1 + 112702 0.67 0.76257
Target:  5'- -cUUCUUCUacgccccggaccaCUUCUCCCCCUgcgCCgCCUCc -3'
miRNA:   3'- gaAAGAAGG-------------GAGGAGGGGGA---GG-GGAG- -5'
21533 3' -58.7 NC_004812.1 + 115872 0.8 0.160814
Target:  5'- ---cCUcCCCUCCcccgcgCCCCCUCCCCUCc -3'
miRNA:   3'- gaaaGAaGGGAGGa-----GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 115910 0.77 0.232258
Target:  5'- ---cCUcCCCUCCcccgcgcCCCCCUCCCCUCc -3'
miRNA:   3'- gaaaGAaGGGAGGa------GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 115950 0.77 0.232258
Target:  5'- ---cCUcCCCUCCcccgcgcCCCCCUCCCCUCc -3'
miRNA:   3'- gaaaGAaGGGAGGa------GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 115977 0.71 0.526519
Target:  5'- ------nCCC-CCgcgcCCCCCUCCCCUCc -3'
miRNA:   3'- gaaagaaGGGaGGa---GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 116010 0.8 0.160814
Target:  5'- ---cCUcCCCUCCcccgcgCCCCCUCCCCUCc -3'
miRNA:   3'- gaaaGAaGGGAGGa-----GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 116036 0.73 0.391005
Target:  5'- ------nCCC-CCgcgCCCCCUCCCCUCc -3'
miRNA:   3'- gaaagaaGGGaGGa--GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 116068 0.8 0.160814
Target:  5'- ---cCUcCCCUCCcccgcgCCCCCUCCCCUCc -3'
miRNA:   3'- gaaaGAaGGGAGGa-----GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 116094 0.71 0.526519
Target:  5'- ------nCCC-CCgcgcCCCCCUCCCCUCc -3'
miRNA:   3'- gaaagaaGGGaGGa---GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 116830 0.72 0.433717
Target:  5'- -----aUCCCUCCUCCgCCUCCUCc- -3'
miRNA:   3'- gaaagaAGGGAGGAGGgGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 117078 0.68 0.655981
Target:  5'- ------gCCCg-CUCCCCCgCCCCUCg -3'
miRNA:   3'- gaaagaaGGGagGAGGGGGaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 118161 0.68 0.676023
Target:  5'- --gUCUcCCCgCgCUCCCCCgUCCCCg- -3'
miRNA:   3'- gaaAGAaGGGaG-GAGGGGG-AGGGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.