miRNA display CGI


Results 21 - 40 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 149062 0.68 0.676023
Target:  5'- --gUCUcCCCgCgCUCCCCCgUCCCCg- -3'
miRNA:   3'- gaaAGAaGGGaG-GAGGGGG-AGGGGag -5'
21533 3' -58.7 NC_004812.1 + 147979 0.68 0.655981
Target:  5'- ------gCCCg-CUCCCCCgCCCCUCg -3'
miRNA:   3'- gaaagaaGGGagGAGGGGGaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 147731 0.72 0.433717
Target:  5'- -----aUCCCUCCUCCgCCUCCUCc- -3'
miRNA:   3'- gaaagaAGGGAGGAGGgGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 146944 0.68 0.655981
Target:  5'- -----gUUCCgggCCgUCCCCCUCCCCg- -3'
miRNA:   3'- gaaagaAGGGa--GG-AGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 146499 0.67 0.754118
Target:  5'- --cUUUUCCCuUCCUCaCCUCUCaCCCcCa -3'
miRNA:   3'- gaaAGAAGGG-AGGAG-GGGGAG-GGGaG- -5'
21533 3' -58.7 NC_004812.1 + 146092 0.67 0.754118
Target:  5'- aCUUUCccgCCCccgCCUCCggcuuCUCUCCCCUa -3'
miRNA:   3'- -GAAAGaa-GGGa--GGAGG-----GGGAGGGGAg -5'
21533 3' -58.7 NC_004812.1 + 145153 0.73 0.416305
Target:  5'- gUUUCUUCCU--UUCCCCCUCCCggCUCc -3'
miRNA:   3'- gAAAGAAGGGagGAGGGGGAGGG--GAG- -5'
21533 3' -58.7 NC_004812.1 + 145032 0.71 0.526519
Target:  5'- -----gUCCCUCC-CCCCCggugCCCCa- -3'
miRNA:   3'- gaaagaAGGGAGGaGGGGGa---GGGGag -5'
21533 3' -58.7 NC_004812.1 + 143758 0.71 0.507286
Target:  5'- -gUUCUUCCCcgcgguUCCUCCCgCgCCCCaUCg -3'
miRNA:   3'- gaAAGAAGGG------AGGAGGGgGaGGGG-AG- -5'
21533 3' -58.7 NC_004812.1 + 140540 0.68 0.666015
Target:  5'- gUUUCcUCCCguggaCUUCgCCCUCCCCg- -3'
miRNA:   3'- gAAAGaAGGGa----GGAGgGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 140037 0.68 0.666015
Target:  5'- uUUUCUuaaaaaUCgCCUCCcacagcUCCUCCUCCCCg- -3'
miRNA:   3'- gAAAGA------AG-GGAGG------AGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 139848 0.67 0.715623
Target:  5'- ------aCCCUCCggCCCCCgcgCCCCcCg -3'
miRNA:   3'- gaaagaaGGGAGGa-GGGGGa--GGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 134632 0.69 0.605686
Target:  5'- ---cCUggCCCUgC-CCCCCUCCCCg- -3'
miRNA:   3'- gaaaGAa-GGGAgGaGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 133643 0.72 0.460609
Target:  5'- ------gCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaagaaGGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133613 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133561 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133509 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133457 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133405 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133353 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.