miRNA display CGI


Results 61 - 80 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 335 0.75 0.314234
Target:  5'- --cUCguccCCCUCCcgUCCCCCUCCCgUCc -3'
miRNA:   3'- gaaAGaa--GGGAGG--AGGGGGAGGGgAG- -5'
21533 3' -58.7 NC_004812.1 + 6157 0.74 0.358872
Target:  5'- cCUUUCcgCCCUCuCUCCCCg-CCCCUg -3'
miRNA:   3'- -GAAAGaaGGGAG-GAGGGGgaGGGGAg -5'
21533 3' -58.7 NC_004812.1 + 153496 0.78 0.196058
Target:  5'- ------aCCCUCCccaccacucccUCCCCCUCCCCUCc -3'
miRNA:   3'- gaaagaaGGGAGG-----------AGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6259 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6363 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6441 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6571 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6649 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6753 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 1059 0.77 0.249424
Target:  5'- -----cUCCCcCCUCCCCCgCCCCUCc -3'
miRNA:   3'- gaaagaAGGGaGGAGGGGGaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 149639 0.69 0.635864
Target:  5'- cCUUUCccCCC-CC-CCCCC-CCCCUUg -3'
miRNA:   3'- -GAAAGaaGGGaGGaGGGGGaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 119717 0.69 0.615736
Target:  5'- ------cCCCUCgUCCCCCcgaCCCUCg -3'
miRNA:   3'- gaaagaaGGGAGgAGGGGGag-GGGAG- -5'
21533 3' -58.7 NC_004812.1 + 8026 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 149372 0.73 0.391005
Target:  5'- -cUUUUUCCCcuUCCUCCCCCaaacCCCCa- -3'
miRNA:   3'- gaAAGAAGGG--AGGAGGGGGa---GGGGag -5'
21533 3' -58.7 NC_004812.1 + 101909 0.72 0.433717
Target:  5'- ------cCCCUCgUCCCCCUCcuggCCCUCg -3'
miRNA:   3'- gaaagaaGGGAGgAGGGGGAG----GGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6929 0.72 0.460609
Target:  5'- -gUUCUUCUCcCCUCCCCCcacaaCCCCg- -3'
miRNA:   3'- gaAAGAAGGGaGGAGGGGGa----GGGGag -5'
21533 3' -58.7 NC_004812.1 + 99261 0.71 0.516867
Target:  5'- --gUCuUUCCCUgCUUCCUCUCCCCc- -3'
miRNA:   3'- gaaAG-AAGGGAgGAGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 9796 0.71 0.526519
Target:  5'- --cUCUUCCUUcCCUCggUCCCUCCCCc- -3'
miRNA:   3'- gaaAGAAGGGA-GGAG--GGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 1661 0.7 0.565745
Target:  5'- -----gUCCCcCCUCCCCCcCCCCcCg -3'
miRNA:   3'- gaaagaAGGGaGGAGGGGGaGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 151270 0.69 0.605686
Target:  5'- --cUC-UCCCgggCCUCCCCC-CgCCUCc -3'
miRNA:   3'- gaaAGaAGGGa--GGAGGGGGaGgGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.