miRNA display CGI


Results 81 - 100 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 8130 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 145153 0.73 0.416305
Target:  5'- gUUUCUUCCU--UUCCCCCUCCCggCUCc -3'
miRNA:   3'- gAAAGAAGGGagGAGGGGGAGGG--GAG- -5'
21533 3' -58.7 NC_004812.1 + 147731 0.72 0.433717
Target:  5'- -----aUCCCUCCUCCgCCUCCUCc- -3'
miRNA:   3'- gaaagaAGGGAGGAGGgGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 104681 0.72 0.479018
Target:  5'- -----gUCCCguuUCCUcCCCCCUCaCCCUCc -3'
miRNA:   3'- gaaagaAGGG---AGGA-GGGGGAG-GGGAG- -5'
21533 3' -58.7 NC_004812.1 + 149161 0.71 0.516867
Target:  5'- gUUUCcccccgCCCUUCUCUCCCagaCCCCUCc -3'
miRNA:   3'- gAAAGaa----GGGAGGAGGGGGa--GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 1661 0.7 0.565745
Target:  5'- -----gUCCCcCCUCCCCCcCCCCcCg -3'
miRNA:   3'- gaaagaAGGGaGGAGGGGGaGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 151270 0.69 0.605686
Target:  5'- --cUC-UCCCgggCCUCCCCC-CgCCUCc -3'
miRNA:   3'- gaaAGaAGGGa--GGAGGGGGaGgGGAG- -5'
21533 3' -58.7 NC_004812.1 + 1059 0.77 0.249424
Target:  5'- -----cUCCCcCCUCCCCCgCCCCUCc -3'
miRNA:   3'- gaaagaAGGGaGGAGGGGGaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6753 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6649 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 140037 0.68 0.666015
Target:  5'- uUUUCUuaaaaaUCgCCUCCcacagcUCCUCCUCCCCg- -3'
miRNA:   3'- gAAAGA------AG-GGAGG------AGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 102986 0.68 0.695926
Target:  5'- ---gCUUCuCCUCgUCCgCCCUCUCCa- -3'
miRNA:   3'- gaaaGAAG-GGAGgAGG-GGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 149672 0.67 0.715623
Target:  5'- --cUUUUCCCcgCUUCCCCCccaCCCCg- -3'
miRNA:   3'- gaaAGAAGGGa-GGAGGGGGa--GGGGag -5'
21533 3' -58.7 NC_004812.1 + 29047 0.67 0.744628
Target:  5'- ---gCgcgCCC-CCUCCCCCgcgCCCCcCg -3'
miRNA:   3'- gaaaGaa-GGGaGGAGGGGGa--GGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 38993 0.67 0.763504
Target:  5'- ---gCggCCCgcgCCgccCCCCCUCCCC-Cg -3'
miRNA:   3'- gaaaGaaGGGa--GGa--GGGGGAGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 153496 0.78 0.196058
Target:  5'- ------aCCCUCCccaccacucccUCCCCCUCCCCUCc -3'
miRNA:   3'- gaaagaaGGGAGG-----------AGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6259 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6363 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6441 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6571 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.