miRNA display CGI


Results 101 - 120 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 7975 0.75 0.307215
Target:  5'- ---cCUcgCCCUcCCUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGA-GGAGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 40264 0.75 0.328632
Target:  5'- uUUUCUUUCCcCC-CCCCCUCCCUa- -3'
miRNA:   3'- gAAAGAAGGGaGGaGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 149639 0.69 0.635864
Target:  5'- cCUUUCccCCC-CC-CCCCC-CCCCUUg -3'
miRNA:   3'- -GAAAGaaGGGaGGaGGGGGaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 151828 0.66 0.79095
Target:  5'- ------gCCCUCgCcccgCCCCCUCCCC-Ca -3'
miRNA:   3'- gaaagaaGGGAG-Ga---GGGGGAGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 6157 0.74 0.358872
Target:  5'- cCUUUCcgCCCUCuCUCCCCg-CCCCUg -3'
miRNA:   3'- -GAAAGaaGGGAG-GAGGGGgaGGGGAg -5'
21533 3' -58.7 NC_004812.1 + 8130 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 15801 0.73 0.399326
Target:  5'- uUUUCcaUUUCCgCCUCCCCaUCCCCUCc -3'
miRNA:   3'- gAAAG--AAGGGaGGAGGGGgAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 8796 0.73 0.40776
Target:  5'- -------gCCUCCUCCCCCUCCCg-- -3'
miRNA:   3'- gaaagaagGGAGGAGGGGGAGGGgag -5'
21533 3' -58.7 NC_004812.1 + 133643 0.72 0.460609
Target:  5'- ------gCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaagaaGGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 7092 0.73 0.397653
Target:  5'- cCUUUUUUUCCUCucugucuCUCCCCCUcggacccccaccgCCCCUCu -3'
miRNA:   3'- -GAAAGAAGGGAG-------GAGGGGGA-------------GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 119693 0.72 0.451545
Target:  5'- --gUCgcugCCCgCgUCCCCCuUCCCCUCg -3'
miRNA:   3'- gaaAGaa--GGGaGgAGGGGG-AGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 143758 0.71 0.507286
Target:  5'- -gUUCUUCCCcgcgguUCCUCCCgCgCCCCaUCg -3'
miRNA:   3'- gaAAGAAGGG------AGGAGGGgGaGGGG-AG- -5'
21533 3' -58.7 NC_004812.1 + 120425 0.73 0.424958
Target:  5'- -cUUCUccUCCCgggCCUCCCCC-CgCCUCc -3'
miRNA:   3'- gaAAGA--AGGGa--GGAGGGGGaGgGGAG- -5'
21533 3' -58.7 NC_004812.1 + 131806 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 116830 0.72 0.433717
Target:  5'- -----aUCCCUCCUCCgCCUCCUCc- -3'
miRNA:   3'- gaaagaAGGGAGGAGGgGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 132437 0.72 0.460609
Target:  5'- -gUUCUUCUCcCCUCCCCCcacaaCCCCg- -3'
miRNA:   3'- gaAAGAAGGGaGGAGGGGGa----GGGGag -5'
21533 3' -58.7 NC_004812.1 + 132170 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 132196 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 132222 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 132248 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.