miRNA display CGI


Results 121 - 140 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 146499 0.67 0.754118
Target:  5'- --cUUUUCCCuUCCUCaCCUCUCaCCCcCa -3'
miRNA:   3'- gaaAGAAGGG-AGGAG-GGGGAG-GGGaG- -5'
21533 3' -58.7 NC_004812.1 + 133509 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133457 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133405 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 132248 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 10593 0.67 0.744628
Target:  5'- ------cCCCgCCUCUUCCUCCCCgUCg -3'
miRNA:   3'- gaaagaaGGGaGGAGGGGGAGGGG-AG- -5'
21533 3' -58.7 NC_004812.1 + 69810 0.67 0.744628
Target:  5'- --gUCgccgccgCCCUCCUCCUCUcCCCC-Cg -3'
miRNA:   3'- gaaAGaa-----GGGAGGAGGGGGaGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 146092 0.67 0.754118
Target:  5'- aCUUUCccgCCCccgCCUCCggcuuCUCUCCCCUa -3'
miRNA:   3'- -GAAAGaa-GGGa--GGAGG-----GGGAGGGGAg -5'
21533 3' -58.7 NC_004812.1 + 8092 0.67 0.763504
Target:  5'- ---gCggCCCgcgCCgccCCCCCUCCCC-Cg -3'
miRNA:   3'- gaaaGaaGGGa--GGa--GGGGGAGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 7386 0.66 0.771855
Target:  5'- -gUUCUUUCCcCCUCCgCCgcucucucacggaCUCCCCUa -3'
miRNA:   3'- gaAAGAAGGGaGGAGG-GG-------------GAGGGGAg -5'
21533 3' -58.7 NC_004812.1 + 132222 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 120927 0.66 0.79095
Target:  5'- ------gCCCUCgCcccgCCCCCUCCCC-Ca -3'
miRNA:   3'- gaaagaaGGGAG-Ga---GGGGGAGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 132482 0.66 0.79095
Target:  5'- ---cCUUCCC-CCaCCCCCgCCCCcaUCg -3'
miRNA:   3'- gaaaGAAGGGaGGaGGGGGaGGGG--AG- -5'
21533 3' -58.7 NC_004812.1 + 24327 0.66 0.806834
Target:  5'- aCUUUCUUaCCC-CC-CCCCCaccaccacacaCCCUCg -3'
miRNA:   3'- -GAAAGAA-GGGaGGaGGGGGag---------GGGAG- -5'
21533 3' -58.7 NC_004812.1 + 106974 0.66 0.817151
Target:  5'- ------cCCCaggggcgCCUCCCCCUCCCg-- -3'
miRNA:   3'- gaaagaaGGGa------GGAGGGGGAGGGgag -5'
21533 3' -58.7 NC_004812.1 + 132170 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 132144 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 132118 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 133613 0.73 0.391005
Target:  5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 132196 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.