Results 21 - 40 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21533 | 5' | -59.1 | NC_004812.1 | + | 132313 | 0.66 | 0.733974 |
Target: 5'- gGuGGGGUUgGGcGGGAcGGAAacucaacagcggccGGGGAGAg -3' miRNA: 3'- aC-CCCCAAaCC-CCCU-CCUU--------------CCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 36173 | 0.66 | 0.733003 |
Target: 5'- aGGGGcacggaggcgGGGGGAGGcccGGGaGGAGAa -3' miRNA: 3'- aCCCCcaaa------CCCCCUCCu--UCC-CCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 5272 | 0.66 | 0.733003 |
Target: 5'- aGGGGcacggaggcgGGGGGAGGcccGGGaGGAGAa -3' miRNA: 3'- aCCCCcaaa------CCCCCUCCu--UCC-CCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 9637 | 0.67 | 0.731058 |
Target: 5'- cGuGGGUgcgucGGGGGAaacucagcgccaccgGGGAGGGGGAc -3' miRNA: 3'- aCcCCCAaa---CCCCCU---------------CCUUCCCCUUu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 61205 | 0.67 | 0.727158 |
Target: 5'- cGGGGGaacgaUGGGcGGGGGGgcuGGGGu-- -3' miRNA: 3'- aCCCCCaa---ACCC-CCUCCUu--CCCCuuu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 106758 | 0.67 | 0.727158 |
Target: 5'- cGGGGGg--GucGGAGGAGGGGcGGc- -3' miRNA: 3'- aCCCCCaaaCccCCUCCUUCCC-CUuu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 36982 | 0.67 | 0.725204 |
Target: 5'- aGGGGGgcgaggggaaGGGGGucggcGGGAAcGGGGGc- -3' miRNA: 3'- aCCCCCaaa-------CCCCC-----UCCUU-CCCCUuu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 6081 | 0.67 | 0.725204 |
Target: 5'- aGGGGGgcgaggggaaGGGGGucggcGGGAAcGGGGGc- -3' miRNA: 3'- aCCCCCaaa-------CCCCC-----UCCUU-CCCCUuu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 7546 | 0.67 | 0.717354 |
Target: 5'- cGcGGGGac-GGGGGAGcgcGGGGAGAc -3' miRNA: 3'- aC-CCCCaaaCCCCCUCcuuCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 70372 | 0.67 | 0.717354 |
Target: 5'- gGuGGGGUauUUGGGGGucguGGAuuGGGGu-- -3' miRNA: 3'- aC-CCCCA--AACCCCCu---CCUu-CCCCuuu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 38447 | 0.67 | 0.717354 |
Target: 5'- cGcGGGGac-GGGGGAGcgcGGGGAGAc -3' miRNA: 3'- aC-CCCCaaaCCCCCUCcuuCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 102262 | 0.67 | 0.707478 |
Target: 5'- -uGGGGUc--GGcGAGGAGGGGGGAGg -3' miRNA: 3'- acCCCCAaacCCcCUCCUUCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 35532 | 0.67 | 0.704503 |
Target: 5'- aGGGGcGg--GGGGGcgggacgcccgcgcGGGGAGGGGc-- -3' miRNA: 3'- aCCCC-CaaaCCCCC--------------UCCUUCCCCuuu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 4631 | 0.67 | 0.704503 |
Target: 5'- aGGGGcGg--GGGGGcgggacgcccgcgcGGGGAGGGGc-- -3' miRNA: 3'- aCCCC-CaaaCCCCC--------------UCCUUCCCCuuu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 66359 | 0.67 | 0.687547 |
Target: 5'- aGGGGGaagcUGGGaGcGGGGgcGGGGGc- -3' miRNA: 3'- aCCCCCaa--ACCC-C-CUCCuuCCCCUuu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 2053 | 0.67 | 0.687547 |
Target: 5'- cGGGGGgcgcGGGGGAGGggGc----- -3' miRNA: 3'- aCCCCCaaa-CCCCCUCCuuCcccuuu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 37225 | 0.67 | 0.687547 |
Target: 5'- cGGGGGgccccGGGcaGGAGGGgcagcAGGGGGc- -3' miRNA: 3'- aCCCCCaaa--CCC--CCUCCU-----UCCCCUuu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 127562 | 0.67 | 0.687547 |
Target: 5'- cGGGGGgcgcGGGGGAGGggGc----- -3' miRNA: 3'- aCCCCCaaa-CCCCCUCCuuCcccuuu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 6324 | 0.67 | 0.687547 |
Target: 5'- cGGGGGgccccGGGcaGGAGGGgcagcAGGGGGc- -3' miRNA: 3'- aCCCCCaaa--CCC--CCUCCU-----UCCCCUuu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 91121 | 0.67 | 0.67751 |
Target: 5'- cGuGGGGUcgcUUGGGGGcGGGGccggucGGGGAc- -3' miRNA: 3'- aC-CCCCA---AACCCCCuCCUU------CCCCUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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