miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21535 3' -46.4 NC_004812.1 + 22244 0.66 0.999976
Target:  5'- --gUAGUUGUUCAggagguuggggccgaCGCGGUgcagGCUCUCg -3'
miRNA:   3'- gaaAUUAAUAAGUg--------------GCGCCA----CGAGGG- -5'
21535 3' -46.4 NC_004812.1 + 89919 0.66 0.999975
Target:  5'- --------cUUCGCCGCGaucgGCUUCCu -3'
miRNA:   3'- gaaauuaauAAGUGGCGCca--CGAGGG- -5'
21535 3' -46.4 NC_004812.1 + 55566 0.66 0.999975
Target:  5'- ---------cUCGCCGCGcUGCUCgCg -3'
miRNA:   3'- gaaauuaauaAGUGGCGCcACGAGgG- -5'
21535 3' -46.4 NC_004812.1 + 28570 0.66 0.999975
Target:  5'- ----------cCGCCGCGccGUGCUgCCCg -3'
miRNA:   3'- gaaauuaauaaGUGGCGC--CACGA-GGG- -5'
21535 3' -46.4 NC_004812.1 + 90441 0.66 0.999975
Target:  5'- ---------cUgGCCGgGGUGCUCgCCc -3'
miRNA:   3'- gaaauuaauaAgUGGCgCCACGAG-GG- -5'
21535 3' -46.4 NC_004812.1 + 116859 0.66 0.999975
Target:  5'- gUUUGAcuuuUUCGCCGCcGUGCggUCCg -3'
miRNA:   3'- gAAAUUaau-AAGUGGCGcCACGa-GGG- -5'
21535 3' -46.4 NC_004812.1 + 154078 0.66 0.999975
Target:  5'- ----------cCGCCGCGccGUGCUgCCCg -3'
miRNA:   3'- gaaauuaauaaGUGGCGC--CACGA-GGG- -5'
21535 3' -46.4 NC_004812.1 + 57067 0.66 0.999975
Target:  5'- -----------gGCCGCGGUcgGCUCCg -3'
miRNA:   3'- gaaauuaauaagUGGCGCCA--CGAGGg -5'
21535 3' -46.4 NC_004812.1 + 93825 0.66 0.999975
Target:  5'- ---------aUCAuCCGCGGcccccUGUUCCCg -3'
miRNA:   3'- gaaauuaauaAGU-GGCGCC-----ACGAGGG- -5'
21535 3' -46.4 NC_004812.1 + 68805 0.66 0.999966
Target:  5'- -------gGUUCGCgGCGGUcaucaaccGCUUCCu -3'
miRNA:   3'- gaaauuaaUAAGUGgCGCCA--------CGAGGG- -5'
21535 3' -46.4 NC_004812.1 + 34884 0.66 0.999966
Target:  5'- -----------gACCGCGGUGC-CCUc -3'
miRNA:   3'- gaaauuaauaagUGGCGCCACGaGGG- -5'
21535 3' -46.4 NC_004812.1 + 126448 0.66 0.999966
Target:  5'- ----------cCGCCGCGc-GCUCCCg -3'
miRNA:   3'- gaaauuaauaaGUGGCGCcaCGAGGG- -5'
21535 3' -46.4 NC_004812.1 + 126179 0.66 0.999966
Target:  5'- ---aGGUUcg-CACCcCGGcGCUCCCg -3'
miRNA:   3'- gaaaUUAAuaaGUGGcGCCaCGAGGG- -5'
21535 3' -46.4 NC_004812.1 + 940 0.66 0.999966
Target:  5'- ----------cCGCCGCGc-GCUCCCg -3'
miRNA:   3'- gaaauuaauaaGUGGCGCcaCGAGGG- -5'
21535 3' -46.4 NC_004812.1 + 671 0.66 0.999966
Target:  5'- ---aGGUUcg-CACCcCGGcGCUCCCg -3'
miRNA:   3'- gaaaUUAAuaaGUGGcGCCaCGAGGG- -5'
21535 3' -46.4 NC_004812.1 + 15145 0.66 0.999966
Target:  5'- ---------gUCGCCuCGGggGCUCCCc -3'
miRNA:   3'- gaaauuaauaAGUGGcGCCa-CGAGGG- -5'
21535 3' -46.4 NC_004812.1 + 137732 0.66 0.999954
Target:  5'- -------aGUUCccgcaGCgCGCGG-GCUCCCg -3'
miRNA:   3'- gaaauuaaUAAG-----UG-GCGCCaCGAGGG- -5'
21535 3' -46.4 NC_004812.1 + 108393 0.66 0.999954
Target:  5'- -----------gGCCGCGGgGCUCCg -3'
miRNA:   3'- gaaauuaauaagUGGCGCCaCGAGGg -5'
21535 3' -46.4 NC_004812.1 + 12826 0.66 0.999954
Target:  5'- -----------gGCCGCGGUGgUCUCu -3'
miRNA:   3'- gaaauuaauaagUGGCGCCACgAGGG- -5'
21535 3' -46.4 NC_004812.1 + 54442 0.66 0.999954
Target:  5'- ----------cCGCCGCGG-GCcCCCg -3'
miRNA:   3'- gaaauuaauaaGUGGCGCCaCGaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.