miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21535 5' -46.5 NC_004812.1 + 21239 0.66 0.999939
Target:  5'- cGGAGGAgcGCCCUCggcuuccccacaUAUGCUAcgCc--- -3'
miRNA:   3'- -CCUUCU--CGGGAG------------AUACGAUuaGuuau -5'
21535 5' -46.5 NC_004812.1 + 76209 0.66 0.999892
Target:  5'- cGGcGGAGCCCUCggcGUGCag--CAGg- -3'
miRNA:   3'- -CCuUCUCGGGAGa--UACGauuaGUUau -5'
21535 5' -46.5 NC_004812.1 + 67266 0.67 0.999763
Target:  5'- aGGAGGGGCCCgagCUccGC--GUCGGg- -3'
miRNA:   3'- -CCUUCUCGGGa--GAuaCGauUAGUUau -5'
21535 5' -46.5 NC_004812.1 + 146396 0.67 0.999613
Target:  5'- cGGccuGGGGGCUCUCgUGUGUUGGUUggUGu -3'
miRNA:   3'- -CC---UUCUCGGGAG-AUACGAUUAGuuAU- -5'
21535 5' -46.5 NC_004812.1 + 22460 0.68 0.999236
Target:  5'- aGGAGGAGUCCg--AUGCgguAUCGGa- -3'
miRNA:   3'- -CCUUCUCGGGagaUACGau-UAGUUau -5'
21535 5' -46.5 NC_004812.1 + 75645 0.69 0.998273
Target:  5'- cGGGAGAcGgCCUC-GUGgUAGUCGAUGa -3'
miRNA:   3'- -CCUUCU-CgGGAGaUACgAUUAGUUAU- -5'
21535 5' -46.5 NC_004812.1 + 147276 0.69 0.996845
Target:  5'- aGGAAGGgauucacccaguacGCCCUCUGUGCUuugccGUCc--- -3'
miRNA:   3'- -CCUUCU--------------CGGGAGAUACGAu----UAGuuau -5'
21535 5' -46.5 NC_004812.1 + 79768 0.73 0.96918
Target:  5'- aGggGAGCCCUCUcgcaggccGUGggGGUCGAa- -3'
miRNA:   3'- cCuuCUCGGGAGA--------UACgaUUAGUUau -5'
21535 5' -46.5 NC_004812.1 + 1698 0.74 0.954226
Target:  5'- cGGggGAuGCCCU--AUGCUGAUUAAa- -3'
miRNA:   3'- -CCuuCU-CGGGAgaUACGAUUAGUUau -5'
21535 5' -46.5 NC_004812.1 + 32599 0.74 0.954226
Target:  5'- cGGggGAuGCCCU--AUGCUGAUUAAa- -3'
miRNA:   3'- -CCuuCU-CGGGAgaUACGAUUAGUUau -5'
21535 5' -46.5 NC_004812.1 + 32482 1.11 0.015592
Target:  5'- cGGAAGAGCCCUCUAUGCUAAUCAAUAa -3'
miRNA:   3'- -CCUUCUCGGGAGAUACGAUUAGUUAU- -5'
21535 5' -46.5 NC_004812.1 + 1581 1.11 0.015592
Target:  5'- cGGAAGAGCCCUCUAUGCUAAUCAAUAa -3'
miRNA:   3'- -CCUUCUCGGGAGAUACGAUUAGUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.