Results 1 - 20 of 250 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21536 | 3' | -58 | NC_004812.1 | + | 35554 | 0.66 | 0.889391 |
Target: 5'- gCGggCGggGCccggauagagggaggGGGCGGCGGGGGcACc -3' miRNA: 3'- gGCa-GCaaCGa--------------UCCGCUGCCCCC-UGc -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 123122 | 0.66 | 0.888736 |
Target: 5'- gCCGUCGgcgGCggcGGCGucggagGCGGGGucgucgucGACGa -3' miRNA: 3'- -GGCAGCaa-CGau-CCGC------UGCCCC--------CUGC- -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 155283 | 0.66 | 0.888736 |
Target: 5'- aCCGgggaggggCGggGCgcGGCGGggccCGGGGGuCGg -3' miRNA: 3'- -GGCa-------GCaaCGauCCGCU----GCCCCCuGC- -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 71403 | 0.66 | 0.888736 |
Target: 5'- -gGUCGcaGC-GGGCG-CGGGGGAa- -3' miRNA: 3'- ggCAGCaaCGaUCCGCuGCCCCCUgc -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 19137 | 0.66 | 0.888736 |
Target: 5'- gCGUgGgcgGCcAGcGCcGCGGGGGGCGc -3' miRNA: 3'- gGCAgCaa-CGaUC-CGcUGCCCCCUGC- -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 79243 | 0.66 | 0.888736 |
Target: 5'- gCUGgCGUcGCUGGGCGACGccgcgggccaGGGGCu -3' miRNA: 3'- -GGCaGCAaCGAUCCGCUGCc---------CCCUGc -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 29775 | 0.66 | 0.888736 |
Target: 5'- aCCGgggaggggCGggGCgcGGCGGggccCGGGGGuCGg -3' miRNA: 3'- -GGCa-------GCaaCGauCCGCU----GCCCCCuGC- -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 102943 | 0.66 | 0.888736 |
Target: 5'- gCCG-CGg----GGGUGGCgGGGGGGCGu -3' miRNA: 3'- -GGCaGCaacgaUCCGCUG-CCCCCUGC- -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 122357 | 0.66 | 0.888736 |
Target: 5'- cCCGgCGgggGCcgGGGCG-CGGGGcGCGg -3' miRNA: 3'- -GGCaGCaa-CGa-UCCGCuGCCCCcUGC- -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 153258 | 0.66 | 0.888736 |
Target: 5'- cCCGgCGgggGCcgGGGCG-CGGGGcGCGg -3' miRNA: 3'- -GGCaGCaa-CGa-UCCGCuGCCCCcUGC- -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 96335 | 0.66 | 0.888736 |
Target: 5'- aCGgCGggGCcggaaAGGCGGCccaGGGGGGCu -3' miRNA: 3'- gGCaGCaaCGa----UCCGCUG---CCCCCUGc -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 154023 | 0.66 | 0.888736 |
Target: 5'- gCCGUCGgcgGCggcGGCGucggagGCGGGGucgucgucGACGa -3' miRNA: 3'- -GGCAGCaa-CGau-CCGC------UGCCCC--------CUGC- -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 145034 | 0.66 | 0.888736 |
Target: 5'- cCCGgcgagcgCGgagGCggGGGCGGCGGcGGACc -3' miRNA: 3'- -GGCa------GCaa-CGa-UCCGCUGCCcCCUGc -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 13017 | 0.66 | 0.888736 |
Target: 5'- uCCGUCGggGCgacucCGGCGGGGucCGu -3' miRNA: 3'- -GGCAGCaaCGaucc-GCUGCCCCcuGC- -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 18364 | 0.66 | 0.888078 |
Target: 5'- aCCGgCGgcGCcgggcccgcGGGCcccacaucguccaGGCGGGGGACGg -3' miRNA: 3'- -GGCaGCaaCGa--------UCCG-------------CUGCCCCCUGC- -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 16841 | 0.66 | 0.888078 |
Target: 5'- gCCGcCGcccUUAGGCGcgcggucGCGGGGGACc -3' miRNA: 3'- -GGCaGCaacGAUCCGC-------UGCCCCCUGc -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 54559 | 0.66 | 0.882065 |
Target: 5'- uCCGaCGgcGCcgGGGCGccGCGGGaGACGg -3' miRNA: 3'- -GGCaGCaaCGa-UCCGC--UGCCCcCUGC- -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 155808 | 0.66 | 0.882065 |
Target: 5'- cCCGgccggGC--GGCGGCGGGGGcgGCGg -3' miRNA: 3'- -GGCagcaaCGauCCGCUGCCCCC--UGC- -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 124907 | 0.66 | 0.882065 |
Target: 5'- cCCGgccggGC--GGCGGCGGGGGcgGCGg -3' miRNA: 3'- -GGCagcaaCGauCCGCUGCCCCC--UGC- -5' |
|||||||
21536 | 3' | -58 | NC_004812.1 | + | 24773 | 0.66 | 0.882065 |
Target: 5'- gCGUCGaUGCgcaccgGGGUGAUGaucaGGGcGACGg -3' miRNA: 3'- gGCAGCaACGa-----UCCGCUGC----CCC-CUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home