miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21540 5' -55.6 NC_004812.1 + 26625 0.66 0.92419
Target:  5'- cUUCGAGG-CC--UCGGgcGCGCGGCGc -3'
miRNA:   3'- cAGGCUCCaGGuuAGCU--UGCGCCGUu -5'
21540 5' -55.6 NC_004812.1 + 35607 0.66 0.92419
Target:  5'- -gCCGAGGcgugcgCCGGgcCGAACGCGGgGGa -3'
miRNA:   3'- caGGCUCCa-----GGUUa-GCUUGCGCCgUU- -5'
21540 5' -55.6 NC_004812.1 + 152133 0.66 0.92419
Target:  5'- cUUCGAGG-CC--UCGGgcGCGCGGCGc -3'
miRNA:   3'- cAGGCUCCaGGuuAGCU--UGCGCCGUu -5'
21540 5' -55.6 NC_004812.1 + 73175 0.66 0.92419
Target:  5'- -cCCGAGGgCCGGUacaGGGCGUGGgCGGg -3'
miRNA:   3'- caGGCUCCaGGUUAg--CUUGCGCC-GUU- -5'
21540 5' -55.6 NC_004812.1 + 107939 0.66 0.918583
Target:  5'- -cCCGAGGaggCCGgccAUC--GCGCGGCGAg -3'
miRNA:   3'- caGGCUCCa--GGU---UAGcuUGCGCCGUU- -5'
21540 5' -55.6 NC_004812.1 + 3084 0.66 0.918583
Target:  5'- --gCGucGGUCCAggCGGGCGgGGCGGg -3'
miRNA:   3'- cagGCu-CCAGGUuaGCUUGCgCCGUU- -5'
21540 5' -55.6 NC_004812.1 + 98519 0.66 0.918583
Target:  5'- uGUCCGcGGG-CCGGguUCGuguGCGCGGCc- -3'
miRNA:   3'- -CAGGC-UCCaGGUU--AGCu--UGCGCCGuu -5'
21540 5' -55.6 NC_004812.1 + 128593 0.66 0.918583
Target:  5'- --gCGucGGUCCAggCGGGCGgGGCGGg -3'
miRNA:   3'- cagGCu-CCAGGUuaGCUUGCgCCGUU- -5'
21540 5' -55.6 NC_004812.1 + 134796 0.66 0.918583
Target:  5'- uUCgGAGGaUCCGaugacgccGUCGGGuacCGCGGCGAa -3'
miRNA:   3'- cAGgCUCC-AGGU--------UAGCUU---GCGCCGUU- -5'
21540 5' -55.6 NC_004812.1 + 109438 0.66 0.918583
Target:  5'- -cCCGAGGcccgCCGAgggaGAGgGCGGCGc -3'
miRNA:   3'- caGGCUCCa---GGUUag--CUUgCGCCGUu -5'
21540 5' -55.6 NC_004812.1 + 98039 0.66 0.912734
Target:  5'- uUCCG-GGUCgGGcUCGGGCGcCGGCu- -3'
miRNA:   3'- cAGGCuCCAGgUU-AGCUUGC-GCCGuu -5'
21540 5' -55.6 NC_004812.1 + 100280 0.66 0.912734
Target:  5'- cUCCG-GGUUC--UCGGAgGCGGCGc -3'
miRNA:   3'- cAGGCuCCAGGuuAGCUUgCGCCGUu -5'
21540 5' -55.6 NC_004812.1 + 38858 0.66 0.912734
Target:  5'- cGUCCGGGGggggCCGAga-GACGCGGa-- -3'
miRNA:   3'- -CAGGCUCCa---GGUUagcUUGCGCCguu -5'
21540 5' -55.6 NC_004812.1 + 13370 0.66 0.912136
Target:  5'- gGUgCGGcGGUCCcuuccgcgccgggGGUCGGggGCGCGGCGGg -3'
miRNA:   3'- -CAgGCU-CCAGG-------------UUAGCU--UGCGCCGUU- -5'
21540 5' -55.6 NC_004812.1 + 114517 0.66 0.906644
Target:  5'- cUCCGGGGcgcgUCgGGUCGGcggACGCGGuCGAu -3'
miRNA:   3'- cAGGCUCC----AGgUUAGCU---UGCGCC-GUU- -5'
21540 5' -55.6 NC_004812.1 + 99213 0.66 0.900315
Target:  5'- gGUCC-AGGUgCCGggCGAACGCgucGGCGGg -3'
miRNA:   3'- -CAGGcUCCA-GGUuaGCUUGCG---CCGUU- -5'
21540 5' -55.6 NC_004812.1 + 100543 0.66 0.900315
Target:  5'- --gCGAGG-CCGccGUCGAAcgcCGCGGCGGa -3'
miRNA:   3'- cagGCUCCaGGU--UAGCUU---GCGCCGUU- -5'
21540 5' -55.6 NC_004812.1 + 38508 0.66 0.893751
Target:  5'- -cCCGGGGUCggaGGUCGcgccggagacGCGCGGCGg -3'
miRNA:   3'- caGGCUCCAGg--UUAGCu---------UGCGCCGUu -5'
21540 5' -55.6 NC_004812.1 + 37454 0.66 0.893751
Target:  5'- gGUgCGuGGUCCAGUCc-GCGgGGCGGu -3'
miRNA:   3'- -CAgGCuCCAGGUUAGcuUGCgCCGUU- -5'
21540 5' -55.6 NC_004812.1 + 128807 0.66 0.893751
Target:  5'- --gCGcGGGUCgAAggCGAGCGCGGCGc -3'
miRNA:   3'- cagGC-UCCAGgUUa-GCUUGCGCCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.