miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21543 3' -57.2 NC_004812.1 + 114716 0.66 0.852367
Target:  5'- cGAAGAg-GCCcuccGCCaGGCGCUCCAg- -3'
miRNA:   3'- -CUUCUagUGGuc--CGG-CCGCGAGGUau -5'
21543 3' -57.2 NC_004812.1 + 55471 0.66 0.852367
Target:  5'- uGGGAUCGCUcgccuacuGGGCCGagcuGCGCgCCAUGc -3'
miRNA:   3'- cUUCUAGUGG--------UCCGGC----CGCGaGGUAU- -5'
21543 3' -57.2 NC_004812.1 + 107647 0.66 0.852367
Target:  5'- cGggGcacGUCGCCGggggcGGCCGGCaGCacgCCGUGg -3'
miRNA:   3'- -CuuC---UAGUGGU-----CCGGCCG-CGa--GGUAU- -5'
21543 3' -57.2 NC_004812.1 + 77392 0.66 0.852367
Target:  5'- -cAGGcgGCCAGGUCGGCGggggcCUCCAg- -3'
miRNA:   3'- cuUCUagUGGUCCGGCCGC-----GAGGUau -5'
21543 3' -57.2 NC_004812.1 + 79140 0.66 0.852367
Target:  5'- --uGGUCGgCAGGCUGGCGCgCUu-- -3'
miRNA:   3'- cuuCUAGUgGUCCGGCCGCGaGGuau -5'
21543 3' -57.2 NC_004812.1 + 19795 0.66 0.852367
Target:  5'- cGAAGAggGCCGcucGGCCcaccucGCGCUCCAg- -3'
miRNA:   3'- -CUUCUagUGGU---CCGGc-----CGCGAGGUau -5'
21543 3' -57.2 NC_004812.1 + 46451 0.66 0.852367
Target:  5'- --uGG-CGCUGGGCCaGGCGCUCUg-- -3'
miRNA:   3'- cuuCUaGUGGUCCGG-CCGCGAGGuau -5'
21543 3' -57.2 NC_004812.1 + 69286 0.66 0.852367
Target:  5'- ---cAUCGUCGGGCC-GCGCUCCAg- -3'
miRNA:   3'- cuucUAGUGGUCCGGcCGCGAGGUau -5'
21543 3' -57.2 NC_004812.1 + 140626 0.66 0.852367
Target:  5'- cGGGGcCGCgGGGUCGGCGCcgCCGg- -3'
miRNA:   3'- cUUCUaGUGgUCCGGCCGCGa-GGUau -5'
21543 3' -57.2 NC_004812.1 + 98687 0.66 0.852367
Target:  5'- -cAGAUUGaggaCuGGCUGGCGCUCCu-- -3'
miRNA:   3'- cuUCUAGUg---GuCCGGCCGCGAGGuau -5'
21543 3' -57.2 NC_004812.1 + 17951 0.66 0.844356
Target:  5'- aGggGGUCGcCCGGGCgaCGGCGg-CCGUc -3'
miRNA:   3'- -CuuCUAGU-GGUCCG--GCCGCgaGGUAu -5'
21543 3' -57.2 NC_004812.1 + 11366 0.66 0.844356
Target:  5'- aGggGGgcggUACCGGGgCGGggauCGCUCCAc- -3'
miRNA:   3'- -CuuCUa---GUGGUCCgGCC----GCGAGGUau -5'
21543 3' -57.2 NC_004812.1 + 47081 0.66 0.844356
Target:  5'- --cGAUCGCCGGGggcgccUCGGCccccgGCUCCGUc -3'
miRNA:   3'- cuuCUAGUGGUCC------GGCCG-----CGAGGUAu -5'
21543 3' -57.2 NC_004812.1 + 3536 0.66 0.844356
Target:  5'- cGggGccgcggCGCCGGGCCGGCuCUUCu-- -3'
miRNA:   3'- -CuuCua----GUGGUCCGGCCGcGAGGuau -5'
21543 3' -57.2 NC_004812.1 + 71750 0.66 0.844356
Target:  5'- cAGGAUgACCGuGCCGGCGCgaucugcgUCCGg- -3'
miRNA:   3'- cUUCUAgUGGUcCGGCCGCG--------AGGUau -5'
21543 3' -57.2 NC_004812.1 + 129044 0.66 0.844356
Target:  5'- cGggGccgcggCGCCGGGCCGGCuCUUCu-- -3'
miRNA:   3'- -CuuCua----GUGGUCCGGCCGcGAGGuau -5'
21543 3' -57.2 NC_004812.1 + 72805 0.66 0.844356
Target:  5'- uGGAGAUgucgacgagCACCAGGCacggGGgGCUCCc-- -3'
miRNA:   3'- -CUUCUA---------GUGGUCCGg---CCgCGAGGuau -5'
21543 3' -57.2 NC_004812.1 + 69660 0.66 0.83615
Target:  5'- cGAAGGUCugCGGuuUGGCGCgCCGc- -3'
miRNA:   3'- -CUUCUAGugGUCcgGCCGCGaGGUau -5'
21543 3' -57.2 NC_004812.1 + 76895 0.66 0.83615
Target:  5'- gGAGGGUgGCCAGGaCGGCGggggCCAc- -3'
miRNA:   3'- -CUUCUAgUGGUCCgGCCGCga--GGUau -5'
21543 3' -57.2 NC_004812.1 + 105704 0.66 0.83615
Target:  5'- -cGGGUgGCgGGGCCGGgGCcCCGa- -3'
miRNA:   3'- cuUCUAgUGgUCCGGCCgCGaGGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.