miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21543 5' -61.8 NC_004812.1 + 112188 0.66 0.709839
Target:  5'- --cGCGGGUUCCCGcCCGGcGCCcCGg -3'
miRNA:   3'- acaUGCCCAGGGGCcGGUCcUGGaGC- -5'
21543 5' -61.8 NC_004812.1 + 94487 0.66 0.709839
Target:  5'- --gGCGGuUUCgCGGCCGGGGCCa-- -3'
miRNA:   3'- acaUGCCcAGGgGCCGGUCCUGGagc -5'
21543 5' -61.8 NC_004812.1 + 1292 0.66 0.709839
Target:  5'- ----aGGGUCCCCGGaggCGGGGCgC-CGa -3'
miRNA:   3'- acaugCCCAGGGGCCg--GUCCUG-GaGC- -5'
21543 5' -61.8 NC_004812.1 + 81436 0.66 0.709839
Target:  5'- cGUcCGGGgCCCagGGCCccaggcgaucgGGGGCCUCc -3'
miRNA:   3'- aCAuGCCCaGGGg-CCGG-----------UCCUGGAGc -5'
21543 5' -61.8 NC_004812.1 + 19100 0.66 0.709839
Target:  5'- ---uCGGG-CUCCGGCCGcGGGCCa-- -3'
miRNA:   3'- acauGCCCaGGGGCCGGU-CCUGGagc -5'
21543 5' -61.8 NC_004812.1 + 126800 0.66 0.709839
Target:  5'- ----aGGGUCCCCGGaggCGGGGCgC-CGa -3'
miRNA:   3'- acaugCCCAGGGGCCg--GUCCUG-GaGC- -5'
21543 5' -61.8 NC_004812.1 + 47055 0.66 0.706981
Target:  5'- cGUGCGGGcgUCCUgCGucagcgccgcgaucGCCGGGggcGCCUCGg -3'
miRNA:   3'- aCAUGCCC--AGGG-GC--------------CGGUCC---UGGAGC- -5'
21543 5' -61.8 NC_004812.1 + 50908 0.66 0.704118
Target:  5'- ----nGGGgCCCCGGCCccgccacccgccuucGGGGCCcCGg -3'
miRNA:   3'- acaugCCCaGGGGCCGG---------------UCCUGGaGC- -5'
21543 5' -61.8 NC_004812.1 + 32272 0.66 0.700293
Target:  5'- gGUccGCGGcGUCCCCccCCGGGGCCg-- -3'
miRNA:   3'- aCA--UGCC-CAGGGGccGGUCCUGGagc -5'
21543 5' -61.8 NC_004812.1 + 145961 0.66 0.700293
Target:  5'- gGUGCGGGgcacCCUCGGgCugGGGGCCg-- -3'
miRNA:   3'- aCAUGCCCa---GGGGCCgG--UCCUGGagc -5'
21543 5' -61.8 NC_004812.1 + 112481 0.66 0.700293
Target:  5'- cGgggGCGGGggcucgacgCCCCGGCCGucaggcGGGCCc-- -3'
miRNA:   3'- aCa--UGCCCa--------GGGGCCGGU------CCUGGagc -5'
21543 5' -61.8 NC_004812.1 + 10067 0.66 0.700293
Target:  5'- gGUACGcgucGUCaucaUCGGCCAGGACCcCu -3'
miRNA:   3'- aCAUGCc---CAGg---GGCCGGUCCUGGaGc -5'
21543 5' -61.8 NC_004812.1 + 11664 0.66 0.700293
Target:  5'- --cACGGGgcgUCCgCCGGCgAGcGGCaCUCGg -3'
miRNA:   3'- acaUGCCC---AGG-GGCCGgUC-CUG-GAGC- -5'
21543 5' -61.8 NC_004812.1 + 118010 0.66 0.700293
Target:  5'- --cGCGGGggaccuggUCCCCGcGCCGGG-CCaggCGg -3'
miRNA:   3'- acaUGCCC--------AGGGGC-CGGUCCuGGa--GC- -5'
21543 5' -61.8 NC_004812.1 + 103854 0.66 0.700293
Target:  5'- gGUugGCGGGaagCCCGGaaaaCAGGuCCUCGu -3'
miRNA:   3'- aCA--UGCCCag-GGGCCg---GUCCuGGAGC- -5'
21543 5' -61.8 NC_004812.1 + 59740 0.66 0.690693
Target:  5'- cGUcUGGGUU-CCGGCCGGGuCC-CGg -3'
miRNA:   3'- aCAuGCCCAGgGGCCGGUCCuGGaGC- -5'
21543 5' -61.8 NC_004812.1 + 54446 0.66 0.690693
Target:  5'- --cGCGGGcCCCCGacgaCGGGGCCgacgCGg -3'
miRNA:   3'- acaUGCCCaGGGGCcg--GUCCUGGa---GC- -5'
21543 5' -61.8 NC_004812.1 + 11829 0.66 0.690693
Target:  5'- gUGUggACGGuGUCCCCGGgagcaaaCAGGAUCg-- -3'
miRNA:   3'- -ACA--UGCC-CAGGGGCCg------GUCCUGGagc -5'
21543 5' -61.8 NC_004812.1 + 137601 0.66 0.690693
Target:  5'- -cUGCGccGG-CCCgCGGCCGcGGGCCUCc -3'
miRNA:   3'- acAUGC--CCaGGG-GCCGGU-CCUGGAGc -5'
21543 5' -61.8 NC_004812.1 + 109947 0.66 0.690693
Target:  5'- --aGCGGaGcugccCCCCGGCCAcGGACCcCa -3'
miRNA:   3'- acaUGCC-Ca----GGGGCCGGU-CCUGGaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.