miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21543 5' -61.8 NC_004812.1 + 31877 0.7 0.453812
Target:  5'- --gGCGGucucCCCCGGCCAGcGCCUCc -3'
miRNA:   3'- acaUGCCca--GGGGCCGGUCcUGGAGc -5'
21543 5' -61.8 NC_004812.1 + 98377 0.72 0.333921
Target:  5'- gGUACGGGUCCUCGGgCGGcgcggcGGCCgCGg -3'
miRNA:   3'- aCAUGCCCAGGGGCCgGUC------CUGGaGC- -5'
21543 5' -61.8 NC_004812.1 + 94104 0.71 0.378991
Target:  5'- cGUGCGcccuGG-CCCUGGUgCGGGGCCUCGc -3'
miRNA:   3'- aCAUGC----CCaGGGGCCG-GUCCUGGAGC- -5'
21543 5' -61.8 NC_004812.1 + 60978 0.71 0.386889
Target:  5'- gGUGCGGGaCCCgacgacgaCGGCCAcguuGGCCUCGa -3'
miRNA:   3'- aCAUGCCCaGGG--------GCCGGUc---CUGGAGC- -5'
21543 5' -61.8 NC_004812.1 + 58358 0.71 0.394894
Target:  5'- --cGCGGGU-CCCGGCCuccAGGGCCgCGc -3'
miRNA:   3'- acaUGCCCAgGGGCCGG---UCCUGGaGC- -5'
21543 5' -61.8 NC_004812.1 + 58430 0.71 0.394894
Target:  5'- --gGCGGGa-CCCGGCCAGGAUCg-- -3'
miRNA:   3'- acaUGCCCagGGGCCGGUCCUGGagc -5'
21543 5' -61.8 NC_004812.1 + 31343 0.71 0.403007
Target:  5'- cGUACGccGUCCggaagaagucgUCGGCCGGGGCCUCc -3'
miRNA:   3'- aCAUGCc-CAGG-----------GGCCGGUCCUGGAGc -5'
21543 5' -61.8 NC_004812.1 + 1917 0.71 0.403007
Target:  5'- -aUAUGGGccgaggCUCCGGCCGGGGCgCUCc -3'
miRNA:   3'- acAUGCCCa-----GGGGCCGGUCCUG-GAGc -5'
21543 5' -61.8 NC_004812.1 + 106505 0.71 0.419543
Target:  5'- --cGCGGGUCCgCGGCgCGGGGCgC-CGg -3'
miRNA:   3'- acaUGCCCAGGgGCCG-GUCCUG-GaGC- -5'
21543 5' -61.8 NC_004812.1 + 50879 0.72 0.326802
Target:  5'- gGUcGCGGGccaccCCCCGGCCcGGugUUCGg -3'
miRNA:   3'- aCA-UGCCCa----GGGGCCGGuCCugGAGC- -5'
21543 5' -61.8 NC_004812.1 + 122101 0.72 0.326802
Target:  5'- --gGCGGG-CCUgGGUCAGGGCCUgGg -3'
miRNA:   3'- acaUGCCCaGGGgCCGGUCCUGGAgC- -5'
21543 5' -61.8 NC_004812.1 + 80598 0.73 0.312903
Target:  5'- --cGCGGGg-CCCGGCUGGGGgCUCGg -3'
miRNA:   3'- acaUGCCCagGGGCCGGUCCUgGAGC- -5'
21543 5' -61.8 NC_004812.1 + 76195 0.77 0.184501
Target:  5'- cGgggACGGGUCCCCGGC--GGAgcCCUCGg -3'
miRNA:   3'- aCa--UGCCCAGGGGCCGguCCU--GGAGC- -5'
21543 5' -61.8 NC_004812.1 + 77600 0.76 0.202898
Target:  5'- gGUcGCGGGcgUCCCCGGCCAGcagcGCCUUGg -3'
miRNA:   3'- aCA-UGCCC--AGGGGCCGGUCc---UGGAGC- -5'
21543 5' -61.8 NC_004812.1 + 117507 0.74 0.250151
Target:  5'- --cGCGGGcCCCCGGCCGcucucggccGGACCcCGg -3'
miRNA:   3'- acaUGCCCaGGGGCCGGU---------CCUGGaGC- -5'
21543 5' -61.8 NC_004812.1 + 75625 0.74 0.280133
Target:  5'- cGU-UGaGGUCCUCGGCCAGGcgggagacgGCCUCGu -3'
miRNA:   3'- aCAuGC-CCAGGGGCCGGUCC---------UGGAGC- -5'
21543 5' -61.8 NC_004812.1 + 95115 0.73 0.292903
Target:  5'- cGUGCugGGGUUCgCGGUCGGGACCgCGg -3'
miRNA:   3'- aCAUG--CCCAGGgGCCGGUCCUGGaGC- -5'
21543 5' -61.8 NC_004812.1 + 155601 0.73 0.299457
Target:  5'- --cGCGGGggcgcggCCCCGGCCGGGcagGCCUa- -3'
miRNA:   3'- acaUGCCCa------GGGGCCGGUCC---UGGAgc -5'
21543 5' -61.8 NC_004812.1 + 51312 0.73 0.305452
Target:  5'- cGUACGGGcagCCCUacgcccaGGCCAGGcccgcCCUCGg -3'
miRNA:   3'- aCAUGCCCa--GGGG-------CCGGUCCu----GGAGC- -5'
21543 5' -61.8 NC_004812.1 + 122348 0.73 0.306123
Target:  5'- --cGCgGGGUUCCCGGCgGGGGCCggggCGc -3'
miRNA:   3'- acaUG-CCCAGGGGCCGgUCCUGGa---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.