Results 21 - 40 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 145726 | 0.67 | 0.760428 |
Target: 5'- -cGUGGUc-CGCGUCCAGcGCccgcgggucggGGGGCu -3' miRNA: 3'- aaCAUCAuaGCGCAGGUC-CG-----------CCCCGc -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 128594 | 0.67 | 0.760428 |
Target: 5'- ------cGUCG-GUCCaggcGGGCGGGGCGg -3' miRNA: 3'- aacaucaUAGCgCAGG----UCCGCCCCGC- -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 17741 | 0.67 | 0.760428 |
Target: 5'- gUGUGGUGUC-CGUUCGuuuguugcgcGGUGuGGGCGg -3' miRNA: 3'- aACAUCAUAGcGCAGGU----------CCGC-CCCGC- -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 94331 | 0.67 | 0.75092 |
Target: 5'- -aGUAGgugugcggCGCGgCCuGcGCGGGGCGg -3' miRNA: 3'- aaCAUCaua-----GCGCaGGuC-CGCCCCGC- -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 95547 | 0.68 | 0.74131 |
Target: 5'- ---gGGcGUCGCGcCCcGGCGGGGuCGa -3' miRNA: 3'- aacaUCaUAGCGCaGGuCCGCCCC-GC- -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 18467 | 0.68 | 0.731605 |
Target: 5'- -cGUGcGUGUaCGUGcccUCCAGGacgaGGGGCGg -3' miRNA: 3'- aaCAU-CAUA-GCGC---AGGUCCg---CCCCGC- -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 34994 | 0.68 | 0.728676 |
Target: 5'- gUUGUAGUAgacCGCGUUgAGGUcggcgagcucggcgGGGGCc -3' miRNA: 3'- -AACAUCAUa--GCGCAGgUCCG--------------CCCCGc -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 45315 | 0.68 | 0.71195 |
Target: 5'- cUUGUucguUCGCaUCCAGGCGGGcGCc -3' miRNA: 3'- -AACAucauAGCGcAGGUCCGCCC-CGc -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 76871 | 0.68 | 0.702018 |
Target: 5'- -----uUGUCGCGaagaUCCGGGCGGGGg- -3' miRNA: 3'- aacaucAUAGCGC----AGGUCCGCCCCgc -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 54606 | 0.68 | 0.702018 |
Target: 5'- -cGUGGc--CGCGgggaCGGGCGGGGCc -3' miRNA: 3'- aaCAUCauaGCGCag--GUCCGCCCCGc -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 35927 | 0.68 | 0.692028 |
Target: 5'- ---cAGUGggGCGg-CAGGCGGGGCa -3' miRNA: 3'- aacaUCAUagCGCagGUCCGCCCCGc -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 95480 | 0.68 | 0.692028 |
Target: 5'- aUGUGGUuguugugCGCGggcgCCGGcgcgccGCGGGGCGc -3' miRNA: 3'- aACAUCAua-----GCGCa---GGUC------CGCCCCGC- -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 5026 | 0.68 | 0.692028 |
Target: 5'- ---aGGUGggGCGg-CAGGCGGGGCa -3' miRNA: 3'- aacaUCAUagCGCagGUCCGCCCCGc -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 45990 | 0.69 | 0.681988 |
Target: 5'- --------cCGCGUCCggcgccguugcGGGCGGGGCGu -3' miRNA: 3'- aacaucauaGCGCAGG-----------UCCGCCCCGC- -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 133667 | 0.69 | 0.678968 |
Target: 5'- -cGUAGgugCccacgagacucuggGCGUCCAGGCgcgGGGGCGc -3' miRNA: 3'- aaCAUCauaG--------------CGCAGGUCCG---CCCCGC- -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 99193 | 0.69 | 0.651661 |
Target: 5'- -cGUGGUGcCGCccggcccccgGUCCAGGUGccGGGCGa -3' miRNA: 3'- aaCAUCAUaGCG----------CAGGUCCGC--CCCGC- -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 100139 | 0.7 | 0.621195 |
Target: 5'- -cGUGGcggCGCGggcggCgGGGCGGGGCu -3' miRNA: 3'- aaCAUCauaGCGCa----GgUCCGCCCCGc -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 81801 | 0.7 | 0.600912 |
Target: 5'- gUGUGGg--CGCgGUUCGGGCGGGcccGCGg -3' miRNA: 3'- aACAUCauaGCG-CAGGUCCGCCC---CGC- -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 98478 | 0.71 | 0.560673 |
Target: 5'- gUGUAGUAcaGgGUCgUGGGUGGGGCGg -3' miRNA: 3'- aACAUCAUagCgCAG-GUCCGCCCCGC- -5' |
|||||||
21544 | 3' | -57.9 | NC_004812.1 | + | 155733 | 0.71 | 0.540821 |
Target: 5'- -gGUGGggggCGCG-CgCGGGCGGGGCu -3' miRNA: 3'- aaCAUCaua-GCGCaG-GUCCGCCCCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home